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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042858 ID=TCONS_00042858|Name=TCONS_00042858|organism=Clytia hemisphaerica|type=transcript|length=1332bp
AAGAAGGGGGCGGTGGAAAGTGTTTGATGATCGAGAAAGGCGTTTTTAAT
GAAGTAGACATTTGCATGATGACCCACCCATCGCCTTACGAATTACCAAG
CCCCTCTTCACTTGGTGTCGCCCAATACAAAATCGTTTTCAAAGGCAAAA
CAGCACACGCAGCAGCGGCGCCATGGGAAGGAATGAACGCATTAGATGCC
GCTGTAGCATGTTATAATAACGTTAGCATGTTACGACAACAAATGAAACC
AACTAATCGTATTCATTGCACTATTGTGGATGGAGGAGAAAGACCAAATA
TCATTCCTGAACGCGCcgaaatgttttattttgttcgCGCGCAAACTGAT
AAAGAAGTCGCGAGTATGGTCGAACGACTCAGAGCGTGCGCTGAAGGAGC
AGCCCAGTCTACAGGCTGTACTATGGAGATGTTTGAATCAAGTCCTTACT
TCGCTGCTGTCAATACAAATCAAGTCATGATCGATCTTTACATCGAAAAC
GCAAAATCACTTGGCGTTCCTTTTGAAGATGATAGCATGAGAGACATATT
GCAAGCTTCGACAGATATGGGAAATGTATCAGCAATGAAACCATCTATAC
ACCCTATATATAAAATAAAATCGGAAGAAACAAACCATAACCATGGCTTT
ACAAAAGCCGCTGGATCTGCGGAAAGTCAGTTACCCACATTGAATTCAGC
AAAGAGTATGGCAATGACCGCTATTGATATCGTTTGCGAGGAAGGACTTT
CAGAAAAGGTTCAGAAAAGCTTCGAAGATTCCTTACTGTAGGCTCATTGA
AATGGAACAGTTGATTTACAATTTGTGGGTATTGGTGTATTAGGTTTTAT
AGGAATATCTTTTAACCTTGTTTCACATTCATATATTACATTTCTGAAGT
ATTGTCTAAAAAAATGGTCTCgaataaaataataaatgatTAAAGTAATA
CTGCGTTGGAAAGATAGTTCCAACTGAggcttttcttttaaattgtaTTG
TACAAGGTTTCCTTTAGCCAGGGTTTCCTTTAATGTATTAAAATGTGACC
ATTGCCATTTTTGGCTGGAACAGACTTTGACTAAATcttctttctattta
ttttttcccacaTTCCATTTACAATTTGTAAACAGCATACACAACAGCAG
TCACAAAGAAATGTCCATAATCAATCGTTAACTCTGTAAAATCGTCATTT
TCTTTATCCATCAAAGTTCTACTGGCAATCGAAGTTCCTTGATGTAAATT
TTGACCTACGTGAACCATCGAGACGATCCGATAACGACTGAATCCAAGAT
GTTTGACTTTCTCTTTGATGGAATTACTTGCA Run BLAST on NCBI transcript from alignment at sc0003737:5176..10538+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042858 ID=TCONS_00042858|Name=TCONS_00042858|organism=Clytia hemisphaerica|type=transcript|length=5363bp|location=Sequence derived from alignment at sc0003737:5176..10538+ (Clytia hemisphaerica)
AAGAAGGGGGCGGTGGAAAGTGTTTGATGATCGAGAAAGGCGTTTTTAAT
GAAGTAGACATTTGCATGATGACCCACCCATCGCCTTACGAATTACCAAG
CCCCTCTTCACTTGGTGTCGCCCAATACAAAATCGTTTTCAAAGGTAAGG
TTCTGTTGAATGAAAACATGGATAAAAGAAGATTTACAGATACAATTTTA
TTACGGATCATCTGATAATGACTCATGAAAATTCTTGTATTGATCATGAT
CTTTAAATTTTATTTGGAAGCCGAATTATAATGAAAATGCAAAAAAACTT
GGTGTTGGTTTTGAAGATGACCATATGAGAGAAACATATGGCCGAAGCAC
TCATTTGTGGGAAAATTGAATTCACAAGGGATTGAAAGTCTCTCGAACGC
AAGATTATACGTTATAACCTTTCTCATTTCACATTTTCTCTCTCCTCAGG
CAAAACAGCACACGCAGCAGCGGCGCCATGGGAAGGAATCAACGCATTAG
ATGCCGCTGTAGCATGTTATAATAACGTTAGCATGTTACGACAACAAATG
AAACCAACTAATCGTATTCATTGCACTATTGTGGATGGAGGAGAAAGACC
CAATATCATCCCTGAACGCGCGGAATTGTTCTATTTCGTTCGCGCGCAAA
CTGATAAAGAAGTTACAGGTTTAGTCGAACGACTCAGAGCGTGTGCTGAA
GGAGCAGCCCAGGCTACAGGTTTGAATTTATCTTTTAATCCCCCTGAAAA
GTTTTATCGATAGAATTAACCTTTCCTATTCGTGTTTTTTGATTTCTAAT
TTCAGTTCAGCTCAATTTTGACAATACTTGAGTGTTTGTTTGTCTATCTG
TCCGCCTGTCTGGAGCAATGTGAAAGTAAATAATGATTTTTGGGCAATGA
CGACgagtttttcaacatttaaaatTTGGAATAGTGTGGAGATTTTAAAT
AATGTCagattttttccttaaaaaatacctaaaattttgaatttgaatgc
cAAAAAATGGTTTTTAGTTTTAGAAATTATAGAAATTATTGTTCAGAGGA
AAGTTCTCTCTCTAAATTTTCACAGGCTGTACAATGGACATGAAGCAAAG
TGCGCCCTCTTGGTCTGCTGTCAACACAAATCAAGTCATGATCGATCTTT
ACATCGAAAATGCAAAATCGCTTGGCGTTCCTTTTGAAGACGACCATATG
AGAGAAACATTCCAAGCGGCAACAGATATGGGAAACGTTTCAGTTGTAAA
ACCGTCCATTCATCCTTATTACAAAATACAAACAGAAGAGATAAACCACA
ACCATGGATTTACAAAAGCCGCTGGATCTGCAGAAAGTCAGTTACCAACA
TTGAATACTGCAAAGAGTATGGCAATGACCGTTATTGATATCGTTTGTGA
GGAAGGACTTTTACAAAAGGTTCAGAAAGGTTTTAAAGAATCTTTACTTT
CGTGATGGAATATAACGAACATGTGATTGCTAAGCTTCCAAAAACACAGA
TATTCAGTtgtctctctctaattcaatcttcaagggacaaacaaagaaag
aattttctcaattagggaaagattcgaattacagagagtatttaATACGA
TTTTTCAGTTGAGGGGGCTAATAGTTTAGttcgaattactttttcaaatg
aGAGAGAGTTTACTGTTCACTGTATCTATTTGTCATGTTTTTGTCCACTT
GTAATAGTAAACTTGTAAATTTTTAACTTGCATTTTTTCACACATCCAAT
TTCATACACCACTCACGGgtaatttatgaattttctatcatataaaaagc
gacaaaagtaatatttttgcaacgttttttaataaaataaatcttttaat
tttcgaaaaattattatTGTTGTACTAAAATTTGTAATTTGTTTGAATGT
GAAAGAATAGTACATTAAcactaaatttcaattttacagCAAATTTAGCT
CTTATTGATTGGcttaaatttatttgaaaacttttataaGAAAGCTTCAA
TGTTATCTTGTCCGTTTTTNAGATTGGcttaaatttatttgaaaattttt
ataagaaagctTCAATGTTATCTTTgcccgtttttttttttcagggtaga
aaatgaaagaaaaattgaaacagatcATTTGCGAAGCCATAGACTCCAAG
AAAGATGAACTAAACAATATCAGTcaagaaatttggaaaaatcctgagtt
gaatttcaaagaatttAAAGCGCATGCTTTGCTGACGTCATATCTCGAGA
AAGAAGGGTTTGAAGTATCAAAGAGCACTCCTTTGGAAACTTCATTTATT
GCTCGTTATGGTAAAAAAGAAGGAATCAAAGTTGGAGTGATTTGTGAATA
TGATGCATTACCTGGAGTTGGACATGCTTGCGGTCATAATTTGATCGCTG
AAGCAGGAATCGGAGCAGCTTTAGGTAGGGAATACAGGTTCAACAATACC
ATATTCAAATAACTGAtcagaaaagtttgaaaacatCTTTTCACCCACCA
TTCAAAGTTATGATCACCAGGGTAACTAGTAAATGTTTGGGAAAAGAGGT
GACGATACAGCCTTAAAGCCATGAAGTATGTCTTAAAAGTATGTGAACAC
TTtaccttttcaacattttctAAGCACCCACTCATGCTATGTTAAAAAGG
TATGTACAGTTGGAAAGGTATTTTTGAGGAGAATGCTATAATATAATAAA
GAATtcggaaaaaagaaaattaaatgaaaatttttctactGGTTTAACAT
TCACAAAAGAGCACTTTTTAGAATATTTAAACCTTTCTGATTCCAAAACT
CAATTCAGATTTTTGGTATGATACTTACTTTGGACCAAAGTTGGGTATAA
TGGTCAAAACTCATCCgaaatagcaaaaaaaacctAGTTTTTGTGCCATT
TTATCAAACCagtagaaaatatattttctttttacttttatttttcttct
tcactgtcaatttttcaagaaattttaatcaaTGGATTGTGAATTGATAA
GCTGATGAATATTCTTTATATCTTTTTCCCTACTCCAGGATTGAAATCAG
TGATTGATTCAAAACCTGATTGCAATTTCCACTTGATCGTTTATGGCACG
CCAGCGGAAGAAGGGGgcggtggaaaatgtttgatgaTCGAAAAAGGCGT
TTTTGATGAAGCAGATATTTGCATGATGAGTCATCCTGCGCCATATGAAA
TTCCGAGCCCTTCTTGGCTTGGTGTTGCCCAATACAGAATCGTTTTCAAA
GGTAGCATTTTTTTATGGTAATAAAtatctattttttatataaaactaAA
CTTAGGCCTACAGCTTAAGTGCCAATCGTCCATAAATGTATTTTTATCCG
ATTAGTACTAAAATGACGAATAATTTACAATACTAACTAATGACTGGGCA
ATAACATTTGAATTTTTCTGCACGTGTAAATACGTGATAATACATTAGAA
TATCTCATTCTTACGAAGAAAATCTTCCAaatctatatttttatatttta
cttaTAATTAATGTATTCTTTTCTCTCCTCAGGCAAAACAGCACACGCAG
CAGCGGCGCCATGGGAAGGAATGAACGCATTAGATGCCGCTGTAGCATGT
TATAATAACGTTAGCATGTTACGACAACAAATGAAACCAACTAATCGTAT
TCATTGCACTATTGTGGATGGAGGAGAAAGACCAAATATCATTCCTGAAC
GCGCcgaaatgttttattttgttcgCGCGCAAACTGATAAAGAAGTCGCG
AGTATGGTCGAACGACTCAGAGCGTGCGCTGAAGGAGCAGCCCAGTCTAC
AGGTTAGAAATTTCTCTCTTACTTGATGAACCAGCTTTTGTAGATTTCAC
TGCTATAATCTGTATGATCAAGCAACTTCCCAGGGGCTANCAGGTTAGAA
ATTTCTCTCTTACTTGATGAACCAGCTTTTGTAGATTTCACTGCTATAAT
CTGTATGATCAAGCAACTTCCCAGGGGCTACTTTGACACAATTGatgtcg
ggtatgtgcgtgccatACGGGTCCTATTTTTaaaccctcgaaagtctctc
aaaaggTAGAAGAATCGagtctgaaagggtcccaaacttacgaaatctaa
aaattggaaaaaatagtctctcaaagggttgcAAAATGTCGAAATTCAGT
AGTCTCTCAAAtggtcgattttcgaactttgacTCGGActtacccgtcac
ctcgcaaacctagtagcTCCCCCCGGGGCAGCTTAAAATGTTGTGTGTTT
ATGGTCCGTCTTTAGAAGTAGTTATCCTGTAGACAGATTGAAGTGTTTAT
GAATTTTCATAGGCTGTACTATGGAGATGTTTGAATCAAGTCCTTACTTC
GCTGCTGTCAATACAAATCAAGTCATGATCGATCTTTACATCGAAAACGC
AAAATCACTTGGCGTTCCTTTTGAAGATGATAGCATGAGAGACATATTGC
AAGCTTCGACAGATATGGGAAATGTATCAGCAATGAAACCATCTATACAC
CCTATATATAAAATAAAATCGGAAGAAACAAACCATAACCATGGCTTTAC
AAAAGCCGCTGGATCTGCGGAAAGTCAGTTACCCACATTGAATTCAGCAA
AGAGTATGGCAATGACCGCTATTGATATCGTTTGCGAGGAAGGACTTTCA
GAAAAGGTTCAGAAAAGCTTCGAAGATTCCTTACTGTAGGCTCATTGAAA
TGGAACAGTTGATTTACAATTTGTGGGTATTGGTGTATTAGGTTTTACAG
GAATATCTTTTAACCTTGTTTCACATTTNTTTAGAAAAGGTTCAGAAAAG
CTTCGAAGATTCCTTACTGTAGGCTCATTGAAATGGAACAGTTGATTTAC
AATTTGTGGGTATTGGTGTATTAGGTTTTATAGGAATATCTTTTAACCTT
GTTTCACATTCATATATTACATTTCTGAAGTATTGTCTAAAAAAATGGTC
TCgaataaaataataaatgatTAAAGTAATACTGCGTTGGAAAGATAGTT
CCAACTGAggcttttcttttaaattgtaTTGTACAAGGTTTCCTTTAGCC
AGGGTTTCCTTTAATGTATTAAAATGTGACCATTGCCATTTTTGGCTGGA
ACAGACTTTGACTAAATcttctttctatttattttttcccacaTTCCATT
TACAATTTGTAAACAGCATACACAACAGCAGTCACAAAGAAATGTCCATA
ATCAATCGTTAACTCTGTAAAATCGTCATTTTCTTTATCCATCAAAGTTC
TACTGGCAATCGAAGTTCCTTGATGTAAATTTTGACCTACGTGAACCATC
GAGACGATCCGATAACGACTGAATCCAAGATGTTTGACTTTCTCTTTGAT
GGAATTACTTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042858-exon-sc0003737-1491911889:5176..5319 | TCONS_00042858-exon-sc0003737-1491911889:5176..5319 | Clytia hemisphaerica | exon |
| TCONS_00042858-exon-sc0003737-1510915933:5176..5319 | TCONS_00042858-exon-sc0003737-1510915933:5176..5319 | Clytia hemisphaerica | exon |
| TCONS_00042858-exon-sc0003737-1575043694:5176..5319 | TCONS_00042858-exon-sc0003737-1575043694:5176..5319 | Clytia hemisphaerica | exon |
| TCONS_00042858-exon-sc0003737-1491911889:8708..8977 | TCONS_00042858-exon-sc0003737-1491911889:8708..8977 | Clytia hemisphaerica | exon |
| TCONS_00042858-exon-sc0003737-1510915933:8708..8977 | TCONS_00042858-exon-sc0003737-1510915933:8708..8977 | Clytia hemisphaerica | exon |
| TCONS_00042858-exon-sc0003737-1575043694:8708..8977 | TCONS_00042858-exon-sc0003737-1575043694:8708..8977 | Clytia hemisphaerica | exon |
| TCONS_00042858-exon-sc0003737-1491911889:9488..9831 | TCONS_00042858-exon-sc0003737-1491911889:9488..9831 | Clytia hemisphaerica | exon |
| TCONS_00042858-exon-sc0003737-1510915933:9488..9831 | TCONS_00042858-exon-sc0003737-1510915933:9488..9831 | Clytia hemisphaerica | exon |
| TCONS_00042858-exon-sc0003737-1575043694:9488..9831 | TCONS_00042858-exon-sc0003737-1575043694:9488..9831 | Clytia hemisphaerica | exon |
| TCONS_00042858-exon-sc0003737-1491911889:9965..10538 | TCONS_00042858-exon-sc0003737-1491911889:9965..10538 | Clytia hemisphaerica | exon |
| TCONS_00042858-exon-sc0003737-1510915933:9965..10538 | TCONS_00042858-exon-sc0003737-1510915933:9965..10538 | Clytia hemisphaerica | exon |
| TCONS_00042858-exon-sc0003737-1575043694:9965..10538 | TCONS_00042858-exon-sc0003737-1575043694:9965..10538 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003737 | supercontig | sc0003737:5176..10538 + |
Blast
BLAST of TCONS_00042858 vs. Swiss-Prot (Human)
Match: P20D2 (Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2) HSP 1 Score: 216.083 bits (549), Expect = 4.063e-64 Identity = 108/262 (41.22%), Postives = 161/262 (61.45%), Query Frame = 3
Query: 3 EGGGGKCLMIEKGVFNEVDICMMTHXXXXXXXXXXXXGVAQYKIVFKGKTAHAAAAPWEGMNALDAAVACYNNVSMLRQQMKPTNRIHCTIVDGGERPNIIPERAEMFYFVRAQTDKEVASMVERLRACAEGAAQSTGCTMEMFESSPYFAAVNTNQVMIDLYIENAKSLGVPF-EDDSMRDILQASTDMGNVSAMKPSIHPIYKIKSEETNHNHGFTKAAGSAESQLPTLNSAKSMAMTAIDIVCEEGLSEKVQKSFEDSL 785
E GGGK +IE G F +D+ M HPS + + + GK +H+A+ PWEG+NALDAAV YNN+S+ RQQMKPT R+H I +GG +PNIIP +E+ Y+ RA + KE+ + ++ C AA ++GCT+E+ + + V N+ + Y+EN + LG+ F +D+M + STD GNVS + P IHP + I S NH +T+AAGS E+Q TL +AK++AMTA+D++ + L E +++ F+ L
Sbjct: 165 EDGGGKIDLIEAGAFTNLDVVFMAHPSQENAAYLPDMAEHDVTVKYYGKASHSASYPWEGLNALDAAVLAYNNLSVFRQQMKPTWRVHGIIKNGGVKPNIIPSYSELIYYFRAPSMKELQVLTKKAEDCFRAAALASGCTVEIKGGAHDYYNVLPNKSLWKAYMENGRKLGIEFISEDTMLNGPSGSTDFGNVSFVVPGIHPYFHIGSNALNHTEQYTEAAGSQEAQFYTLRTAKALAMTALDVIFKPELLEGIREDFKLKL 426
The following BLAST results are available for this feature:
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