TCONS_00042867 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042867
Unique NameTCONS_00042867
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042867 ID=TCONS_00042867|Name=TCONS_00042867|organism=Clytia hemisphaerica|type=transcript|length=505bp
CAAGATATTGCTGGATATACATTAGAGAGTCAAATTTGATGTAATGAGCT
AGAATGATGCAAGGTTGGAAATCTCAATTTTTGTGTCTTATCTTTATTTC
CTTTTATGAATCGATCTATCACTTATTATTTATAGTTAGCAATATTGAGA
AAAAGcaaatctaaaatgaaagataaatATATTTGGATAACTCAGACAAC
CTTTCGACAGTGGTTGTAGCTCAAAACCCAACATGGGTACGAGAGAAGGA
CAAATAATCACTTTGCCCTCTACCTGTTGAACGTATACGTATACCAAACC
AACCAACGATTTTAGAGATATTTGCTTGACATGAAGAAAACGCTACATAT
CCCCGTAACTTTGGACATTAATAAATGATTGGCAAAATGGTATTAACATT
ACATTGTATTGAGATGTGAAACTGGTCcaagttgaagaattgatgagaaG
AATGGGCAGTACAAGAAATATTTGCTTTGGAATACAAACTCTTATATGGA
CAATA
Run BLAST on NCBI

transcript from alignment at sc0003745:2489..2993

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042867 ID=TCONS_00042867|Name=TCONS_00042867|organism=Clytia hemisphaerica|type=transcript|length=505bp|location=Sequence derived from alignment at sc0003745:2489..2993 (Clytia hemisphaerica)
TATTGTCCATATAAGAGTTTGTATTCCAAAGCAAATATTTCTTGTACTGC
CCATTCttctcatcaattcttcaacttgGACCAGTTTCACATCTCAATAC
AATGTAATGTTAATACCATTTTGCCAATCATTTATTAATGTCCAAAGTTA
CGGGGATATGTAGCGTTTTCTTCATGTCAAGCAAATATCTCTAAAATCGT
TGGTTGGTTTGGTATACGTATACGTTCAACAGGTAGAGGGCAAAGTGATT
ATTTGTCCTTCTCTCGTACCCATGTTGGGTTTTGAGCTACAACCACTGTC
GAAAGGTTGTCTGAGTTATCCAAATATatttatctttcattttagatttg
CTTTTTCTCAATATTGCTAACTATAAATAATAAGTGATAGATCGATTCAT
AAAAGGAAATAAAGATAAGACACAAAAATTGAGATTTCCAACCTTGCATC
ATTCTAGCTCATTACATCAAATTTGACTCTCTAATGTATATCCAGCAATA
TCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026650XLOC_026650Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042867-exon-sc0003745-1491911889:2489..2993TCONS_00042867-exon-sc0003745-1491911889:2489..2993Clytia hemisphaericaexon
TCONS_00042867-exon-sc0003745-1510915933:2489..2993TCONS_00042867-exon-sc0003745-1510915933:2489..2993Clytia hemisphaericaexon
TCONS_00042867-exon-sc0003745-1575043694:2489..2993TCONS_00042867-exon-sc0003745-1575043694:2489..2993Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003745supercontigsc0003745:2489..2993 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.126903	0.599107	0	1.85566	2.58948	0.565647	1.24726	0	0	0.177985	0.212842	0.316868	0.324654	0.479771	0.904657	0	0.683812	0.422382	0.372414	0.805281	0.361503	0.221075	0.266056	1.76559	1.36117	1.14536	0	2.6715	2.0267
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042867 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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