TCONS_00042868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042868
Unique NameTCONS_00042868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2026

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042868 ID=TCONS_00042868|Name=TCONS_00042868|organism=Clytia hemisphaerica|type=transcript|length=2026bp
CTATATGgtttatcataaagaaaatcaagttgaccgttcaagctatcaaa
tgtcgtttggttagatattcccgctttGTTCGTTAGtatagttgatacat
tagtattcagggcttacttcatactgctTGTGCAAAAATGTTATCTTTAa
aattctatttcaatgatcttaagttaaaaatttttccggccggccgcatg
aaaacttttttccttcactcgcattccggaaacactacatttttttactt
tcgcCTAAGATAAAAATAAGACTATTTGGTTTTTCGTTTTTCACTTTGAT
AATCCATTAATATATTTCAAGTTCATTTCTTCTACTTTGTAAACGACGTG
AGGGCGGACCCGCCGTTTCCGGTGAGCGGAAAATAACACACAATGCGGGA
AAACAAATATTTGTACACATAAGTCATTCACAATTTTCcgatatttttta
atacgccagTAATACAGCAGAGGACTACTAGCTGAATGTAGGTacgaaaa
tatcaaaactccaacaACAGTTTCCATGGAAACGGCTCCATATTGGTGCA
AAGCTATAATCATGTTTACAACTCCCAAGGGGAATATGGATAGAATATAA
AATAAAGATAATAATAAGATAGTCGTTGACATTCTTGTCTTGTAGCAATA
ATCGATAAAATACTTCCCTTTTTTATGCATGGCGGTGGGCGTGACTGGAG
GGTGGTTTTGTATGCGAAATCCATTTCGCCTGACAGTTCTTAAAATGCGA
TAATAGATAAATAAAAGTACTAAAGTAGGAGTCATAACTGTCACAAccga
tgaaaataaaatgtaactttttgcTAACATGTCTATATCACCATGGGAAC
CATGCACCAAACATTGTGTGCTCCCTTCTGTGAAACGAAAAACGCCCCAA
CCAAGAACAGGCGGGATGGCGACAATAAAAGAGATCACCCAAGTTGAACA
AATTAAGATTTTCGATTTATGAGGCGTTAGCGTGTCACATCGTTTAACGA
TTATAAAATAGCGATCTATAGATATCACCAGCAGCACTAGAACTTTCTCA
CAATTCAACATTTGGAATATGAATCCATTGAACCGACAAAATGGTTGATT
AAAAGGCCATCCAGTGGAATTAAGGACAGCTAACGCTACAGGAACGTGTA
ACAAAACCAATAAAAAGTCTGTTAAAGCCACATTAGCCAGTAGTAGATTA
ATAGCCGATCGCATAGCACTACGACGATATACGATCCCACATAAAAGTAG
ATTCCCAAATAACGATATGACGACCACCACAACCAACAAGAAGGTTAGAA
AACCGCGAACACTATTTGTCGGGTAGCATTTCTCAGGAGAAGTATTGGCA
TATACACATAAGACTTTGTTCATCGTGATATTATTTGTGTGGCTAGTTGA
TGGAGAAAGAAGAGAAGGTTCCCTCATGATATACATAAGTGAATCAGCTT
GAAAACACGTGTTGTGATATTTTACAGTACTATAATTTATTGGCTATCAC
AGCCAGACAATGTTCTGAGTTTTTACGAATATTACTTTGAAATTTTACGG
TCCACAACTTGTTTGTCTTTCCTAGATAGAGTTTAGGAAAGGTTATATTT
GAAGTCTTGTGAACCTATAGTTTAGTCAGTAAACAACTAGCATGTATTAT
ACAGTAGCCACCAGTGAAGCTAccattacatattttgagaatGGGTCATC
GTCACTAGGAACGCAAGAGTGTTGACACTGAAGCAAATTCCAATTTCAAA
AATGCTTCCNATGGGTCATCGAGACTAGGAACGCAAGAGTGTTGACACTG
TAGCAAATTCCAATTTCAAACATGCTCTTATCTTTCATGTCTCTCTATAG
CAGTCTTTCAATTATCgtcaaaaatattaaaagatattCTTAATACCACC
AAAAACAACTTCTCTGTCACTCATTGGAATGTAATTAGCAAGATTGATTG
TTCGTTTTTTGTTGATTAACAGTAATTATTTTTACTATTGATAGAAAGAG
AATAGAACATGAAGGATGTAGAGATA
Run BLAST on NCBI

protein sequence of TCONS_00042868-protein

>TCONS_00042868-protein ID=TCONS_00042868-protein|Name=TCONS_00042868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=381bp
MYIMREPSLLSPSTSHTNNITMNKVLCVYANTSPEKCYPTNSVRGFLTFL
LVVVVVISLFGNLLLCGIVYRRSAMRSAINLLLANVALTDFLLVLLHVPV
ALAVLNSTGWPFNQPFCRFNGFIFQMLNCEKVLVLLVISIDRYFIIVKRC
DTLTPHKSKILICSTWVISFIVAIPPVLGWGVFRFTEGSTQCLVHGSHGD
IDMLAKSYILFSSVVTVMTPTLVLLFIYYRILRTVRRNGFRIQNHPPVTP
TAMHKKGKYFIDYCYKTRMSTTILLLSLFYILSIFPLGVVNMIIALHQYG
AVSMETVVGVLIFSYLHSASSPLLYYWRIKKYRKIVNDLCVQIFVFPHCV
LFSAHRKRRVRPHVVYKVEEMNLKYINGLSK
Run BLAST on NCBI

transcript from alignment at sc0003746:862..2887

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042868 ID=TCONS_00042868|Name=TCONS_00042868|organism=Clytia hemisphaerica|type=transcript|length=2026bp|location=Sequence derived from alignment at sc0003746:862..2887 (Clytia hemisphaerica)
TATCTCTACATCCTTCATGTTCTATTCTCTTTCTATCAATAGTAAAAATA
ATTACTGTTAATCAACAAAAAACGAACAATCAATCTTGCTAATTACATTC
CAATGAGTGACAGAGAAGTTGTTTTTGGTGGTATTAAGaatatcttttaa
tatttttgacGATAATTGAAAGACTGCTATAGAGAGACATGAAAGATAAG
AGCATGTTTGAAATTGGAATTTGCTACAGTGTCAACACTCTTGCGTTCCT
AGTCTCGATGACCCATNGGAAGCATTTTTGAAATTGGAATTTGCTTCAGT
GTCAACACTCTTGCGTTCCTAGTGACGATGACCCattctcaaaatatgta
atggTAGCTTCACTGGTGGCTACTGTATAATACATGCTAGTTGTTTACTG
ACTAAACTATAGGTTCACAAGACTTCAAATATAACCTTTCCTAAACTCTA
TCTAGGAAAGACAAACAAGTTGTGGACCGTAAAATTTCAAAGTAATATTC
GTAAAAACTCAGAACATTGTCTGGCTGTGATAGCCAATAAATTATAGTAC
TGTAAAATATCACAACACGTGTTTTCAAGCTGATTCACTTATGTATATCA
TGAGGGAACCTTCTCTTCTTTCTCCATCAACTAGCCACACAAATAATATC
ACGATGAACAAAGTCTTATGTGTATATGCCAATACTTCTCCTGAGAAATG
CTACCCGACAAATAGTGTTCGCGGTTTTCTAACCTTCTTGTTGGTTGTGG
TGGTCGTCATATCGTTATTTGGGAATCTACTTTTATGTGGGATCGTATAT
CGTCGTAGTGCTATGCGATCGGCTATTAATCTACTACTGGCTAATGTGGC
TTTAACAGACTTTTTATTGGTTTTGTTACACGTTCCTGTAGCGTTAGCTG
TCCTTAATTCCACTGGATGGCCTTTTAATCAACCATTTTGTCGGTTCAAT
GGATTCATATTCCAAATGTTGAATTGTGAGAAAGTTCTAGTGCTGCTGGT
GATATCTATAGATCGCTATTTTATAATCGTTAAACGATGTGACACGCTAA
CGCCTCATAAATCGAAAATCTTAATTTGTTCAACTTGGGTGATCTCTTTT
ATTGTCGCCATCCCGCCTGTTCTTGGTTGGGGCGTTTTTCGTTTCACAGA
AGGGAGCACACAATGTTTGGTGCATGGTTCCCATGGTGATATAGACATGT
TAgcaaaaagttacattttattttcatcggTTGTGACAGTTATGACTCCT
ACTTTAGTACTTTTATTTATCTATTATCGCATTTTAAGAACTGTCAGGCG
AAATGGATTTCGCATACAAAACCACCCTCCAGTCACGCCCACCGCCATGC
ATAAAAAAGGGAAGTATTTTATCGATTATTGCTACAAGACAAGAATGTCA
ACGACTATCTTATTATTATCTTTATTTTATATTCTATCCATATTCCCCTT
GGGAGTTGTAAACATGATTATAGCTTTGCACCAATATGGAGCCGTTTCCA
TGGAAACTGTtgttggagttttgatattttcgtACCTACATTCAGCTAGT
AGTCCTCTGCTGTATTActggcgtattaaaaaatatcgGAAAATTGTGAA
TGACTTATGTGTACAAATATTTGTTTTCCCGCATTGTGTGTTATTTTCCG
CTCACCGGAAACGGCGGGTCCGCCCTCACGTCGTTTACAAAGTAGAAGAA
ATGAACTTGAAATATATTAATGGATTATCAAAGTGAAAAACGAAAAACCA
AATAGTCTTATTTTTATCTTAGgcgaaagtaaaaaaatgtagtgtttccg
gaatgcgagtgaaggaaaaaagttttcatgcggccggccggaaaaatttt
taacttaagatcattgaaatagaatttTAAAGATAACATTTTTGCACAag
cagtatgaagtaagccctgaatactaatgtatcaactataCTAACGAACa
aagcgggaatatctaaccaaacgacatttgatagcttgaacggtcaactt
gattttctttatgataaacCATATAG

Coding sequence (CDS) from alignment at sc0003746:862..2887

>TCONS_00042868 ID=TCONS_00042868|Name=TCONS_00042868|organism=Clytia hemisphaerica|type=CDS|length=1146bp|location=Sequence derived from alignment at sc0003746:862..2887 (Clytia hemisphaerica)
ATGTATATCATGAGGGAACCTTCTCTTCTTTCTCCATCAACTAGCCACAC
AAATAATATCACGATGAACAAAGTCTTATGTGTATATGCCAATACTTCTC
CTGAGAAATGCTACCCGACAAATAGTGTTCGCGGTTTTCTAACCTTCTTG
TTGGTTGTGGTGGTCGTCATATCGTTATTTGGGAATCTACTTTTATGTGG
GATCGTATATCGTCGTAGTGCTATGCGATCGGCTATTAATCTACTACTGG
CTAATGTGGCTTTAACAGACTTTTTATTGGTTTTGTTACACGTTCCTGTA
GCGTTAGCTGTCCTTAATTCCACTGGATGGCCTTTTAATCAACCATTTTG
TCGGTTCAATGGATTCATATTCCAAATGTTGAATTGTGAGAAAGTTCTAG
TGCTGCTGGTGATATCTATAGATCGCTATTTTATAATCGTTAAACGATGT
GACACGCTAACGCCTCATAAATCGAAAATCTTAATTTGTTCAACTTGGGT
GATCTCTTTTATTGTCGCCATCCCGCCTGTTCTTGGTTGGGGCGTTTTTC
GTTTCACAGAAGGGAGCACACAATGTTTGGTGCATGGTTCCCATGGTGAT
ATAGACATGTTAgcaaaaagttacattttattttcatcggTTGTGACAGT
TATGACTCCTACTTTAGTACTTTTATTTATCTATTATCGCATTTTAAGAA
CTGTCAGGCGAAATGGATTTCGCATACAAAACCACCCTCCAGTCACGCCC
ACCGCCATGCATAAAAAAGGGAAGTATTTTATCGATTATTGCTACAAGAC
AAGAATGTCAACGACTATCTTATTATTATCTTTATTTTATATTCTATCCA
TATTCCCCTTGGGAGTTGTAAACATGATTATAGCTTTGCACCAATATGGA
GCCGTTTCCATGGAAACTGTtgttggagttttgatattttcgtACCTACA
TTCAGCTAGTAGTCCTCTGCTGTATTActggcgtattaaaaaatatcgGA
AAATTGTGAATGACTTATGTGTACAAATATTTGTTTTCCCGCATTGTGTG
TTATTTTCCGCTCACCGGAAACGGCGGGTCCGCCCTCACGTCGTTTACAA
AGTAGAAGAAATGAACTTGAAATATATTAATGGATTATCAAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026651XLOC_026651Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042868-proteinTCONS_00042868-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042868-exon-sc0003746-1491911889:862..2887TCONS_00042868-exon-sc0003746-1491911889:862..2887Clytia hemisphaericaexon
TCONS_00042868-exon-sc0003746-1510915933:862..2887TCONS_00042868-exon-sc0003746-1510915933:862..2887Clytia hemisphaericaexon
TCONS_00042868-exon-sc0003746-1575043694:862..2887TCONS_00042868-exon-sc0003746-1575043694:862..2887Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003746supercontigsc0003746:862..2887 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.92808	2.76237	0.834378	0.46241	1.7804	1.48894	1.19109	2.11041	0.864549	1.63296	2.3918	1.19885	1.85951	1.30785	2.24462	3.02477	1.93901	2.90226	2.98895	3.3203	1.44302	1.46742	3.22361	3.91683	0.343339	0.386284	3.59017	2.54832	2.87877	3.02759
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
[Close]
BLAST of TCONS_00042868 vs. Swiss-Prot (Human)
Match: GPR63 (Probable G-protein coupled receptor 63 OS=Homo sapiens GN=GPR63 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.219e-35
Identity = 113/320 (35.31%), Postives = 176/320 (55.00%), Query Frame = -3 
Query:  327 LLCGIVYRRSAMRSAINLLLANVALTDFXXXXXXXXXXXXXLNSTGWPFNQPFCRFNGFIFQMLNCEKVLVLLVISIDRYFIIVKRCDTLTPHKSKILICSTWVISFIVAIPPVLGWGVFRFTEGSTQCLVHGSHGDIDMLAKSYILFSSXXXXXXXXXXXLFIYYRILRTVRRNGFRIQNHPP---------VTPTAMHKKGKYFIDYCYKTRMXXXXXXXXXXXXXXXXXLGVVNMIIALHQ---YGAVSMETVVGVLIFSYLHSASSPLLYYWRIKKYRKIVNDLCVQIFVF-PHCVLFSAHRKRRVRPHVVYKVEE 1247
            ++C +VY+++AMRSAIN+LLA++A  D LL +L++P AL  + +T W F + FCR +   F +   E V +LL+ISIDR+ IIV+R D L P+++K+LI  +W  SF VA P  +G    +    + QC V G   +     ++Y++  S+++   P LV+L+ +  IL T+R N  RI ++P          +   ++ +  +  ID  +KTR  TTIL+L   +I+   P    +++    +   Y     E    +L   YL SA +PL+YYWRIKK+     D+  + F F P       H KRR+RP  VY   E
Sbjct:  101 VVCLMVYQKAAMRSAINILLASLAFADMLLAVLNMPFALVTILTTRWIFGKFFCRVSAMFFWLFVIEGVAILLIISIDRFLIIVQRQDKLNPYRAKVLIAVSWATSFCVAFPLAVGNPDLQIPSRAPQC-VFGYTTNPGY--QAYVILISLISFFIPFLVILYSFMGILNTLRHNALRIHSYPEGICLSQASKLGLMSLQRPFQMSIDMGFKTRAFTTILILFAVFIVCWAPFTTYSLVATFSKHFYYQHNFFEISTWLLWLCYLKSALNPLIYYWRIKKFHDACLDMMPKSFKFLPQ---LPGHTKRRIRPSAVYVCGE 414
The following BLAST results are available for this feature:
BLAST of TCONS_00042868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GPR631.219e-3535.31Probable G-protein coupled receptor 63 OS=Homo sap... [more]
back to top