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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042872 ID=TCONS_00042872|Name=TCONS_00042872|organism=Clytia hemisphaerica|type=transcript|length=964bp
ataacaataataacaataatcgCACGGGCTAGTTTGTCTGGTTACACCGA
CTATATTTAACGACATTAATTTATCTTACGTTTTATTCTGAGCTGTTAGG
CCATTCACGCGCACAAAATAATTAATGCAACGCGCCAAactaaaatgttt
ttgaacCGAATTTCAGACTCACGTGCACTTTTCATCACATCAATCTTCAA
GTATCATATTAAGCAGTCAAGACAAGTCAAGTATTTATAATCAAACTCAG
GTGTATTTTTTCATCGTCTAAAAAACAACAGcaaattttcgagaaaacta
AAGTTTTCAGTGTAACAAATATTTAACGTTATGGATTCGCGAAACATTAA
CTCCATGAACATTGAACAGTTATATGATTTTCTCACTGAAAAATATTCAA
CAGAACTAGCAGACAAAGTCAAAGccTCTAACATTGATGGGAAGCTTTTT
ACTGTAATGTGCCAAAGCACTAGTAAACATCACTACTTTTCTATGTTGGA
GCTGTCTCTAGTGGAAATGTTGAAATTAGAAAGCGACTTTACTGCAATTT
CACCAATAATTACATCAAAAACACCCGTCACACCAAGTTCGCACGCTTTA
GTTACTGGCCGTCACAGATTACAgtTAAAAATGATCCGGGCAGAATCTAT
CAAAATGTGGCCCGATAATCACAACCTACCACGCTTTGACActgatgtaa
acaaagatgCTTTAGCTAAGCTGGTGTCAACTCTTAAGTCAAAAAGCTTG
TTTGGACATTTGGATAAGAAAGCCATCAAAGCCAAAGTTCTGTCGCACAT
GACGGATAGGCGGAAAACATCAAGAAAAATTGATTTCGTAtgtattgatt
ttgattttcaaattattgttttctttattttgccaTCTTCCTATTTTTAA
TTTAGGTTATATTGGAACTGGCTATTTTTTCTGCTTCTGACTTATTTTCT
TTGTATGTTGTTTT Run BLAST on NCBI protein sequence of TCONS_00042872-protein >TCONS_00042872-protein ID=TCONS_00042872-protein|Name=TCONS_00042872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MDSRNINSMNIEQLYDFLTEKYSTELADKVKASNIDGKLFTVMCQSTSKH
HYFSMLELSLVEMLKLESDFTAISPIITSKTPVTPSSHALVTGRHRLQLK
MIRAESIKMWPDNHNLPRFDTDVNKDALAKLVSTLKSKSLFGHLDKKAIK
AKVLSHMTDRRKTSRKIDFVCIDFDFQIIVFFILPSSYF Run BLAST on NCBI transcript from alignment at sc0003753:2683..5714+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042872 ID=TCONS_00042872|Name=TCONS_00042872|organism=Clytia hemisphaerica|type=transcript|length=3032bp|location=Sequence derived from alignment at sc0003753:2683..5714+ (Clytia hemisphaerica)
ataacaataataacaataatcgCACGGGCTAGTTTGTCTGGTTACACCGA
CTATATTTAACGACATTAATTTATCTTACGTTTTATTCTGAGCTGTTAGG
CCATTCACGCGCACAAAATAATTAATGCAACGCGCCAAactaaaatgttt
ttgaacCGAATTTCAGACTCACGTGCACTTTTCATCACATCAATCTTCAA
GTATCATATTAAGCAGTCAAGACAAGTCAAGTATTTATAATCAAACTCAG
GTGTATTTTTTCATCGTCTAAAAAACAACAGcaaattttcgagaaaacta
AAGTTTTCAGTGTAACAAATATTTAACGTTATGGATTCGCGAAACATTAA
CTCCATGAACATTGAACAGTTATATGATTTTCTCACTGAAAAATATTCAA
CAGAACTAGCAGACAAAGTCAAAGGTAAGAACATATTTTCTGATATTCCT
ACTTTATATTCTTGTACTTTGTATTCCTGTAGGGGATTTATAAATCATGA
AAGTATACAGTACAggtttttggtaaaattaatCAGACTTTGTTggctga
tttttttatattatgaacaTTTTATGTCATAGGTTCaattgattaaaagc
aattaaaacttttaaatttttgttcaattcTGCCCATTAACATGACATTG
TCTTGGAATATCGCAGGTTTGTGATTTgggaaattttgataaaaaatttt
gctcGGATGTTATATAAATATTTACTTGGttattgaccttggttgctgca
caacACAGGAGAGGGACTAAGGTTAATAATTCTCCCACTTacagcagttc
acttggcaagtgaatgaaccttcgcctgggtcaaccatgtgaggggaatt
gggtagtagTTAGTcaaaggtgctgacggggcgctcgtTGAAAGTATAAC
TATATAATAGTTaagaaaataggcctcaaagcctcctgcaactcaaccaa
atagaaatagacaTCTATTTTTTTACATGCACATTTTATAAAGCTTAAGA
ATCTTTGAAGCTAAACTATCTGTCTAAAAAAAGTACTGATCCCTCAATTG
AGATCACGAAGGCCTGGATAACCTTCATAAGTGTCTTTGATTGCGACTAA
AGCTTAAGGTCATATTATCCGACCTTTTGAATTCTTTGGTGTCCGGATTT
GTACTTGCGCGCTTATTCAAGTCATACCAAACCTTGTTTGAGTATGCaca
tatttttggaaatgtagctttaaagaaaaaaaattaaaaccacaGTAGCT
GATCTGTACTGCAAATAGTGATCACGGAGCTGATTGATTTCTGGAGTTTG
CTCACATATCTCATTACTATAAAGTCCCAACTTTTTTGAATATAGCAgaa
ttaatagaaaaaaatttaaaaagtttatcaaaatactttttctaaatCGT
AACACAAATAATTCCTTTAAATATAATCTACCTTAAGAGAAGTAATTTTG
GTGAGAATTTACTTTGGTGAGTGGGCAATTTCTTATTATAATTTTGTTGA
GAATTTATTCCAGTCTGTATTTTGTTGACTTTAAATGTTCGAGATTGTGC
TcattcttctttaaaaaattggtaTATGGCTGCTGTGGGGTGAAATCAGA
AGTACAATGGTGTACAAGCTATCTATCGGTACTACGTTAGCTCATCCctg
atttcatcattttttcactttgaaaGCGACGCAAAATGATATTATTTCAA
GTTCAGGGTACATACATGAATGATAAACTCAAAGATTCTTAAAGCTTTAG
TGTGTAAAGTACCAGATTATGTCCTAAACTAGACCCAATTTTAGAATGTA
TTCCAATAAAGTaccttaaggaaagaaattttggcaattGGGCTCATTCG
CTAATTTCAGTGCAATTTTGCAGAATAGAGAAAGAATTTAGCAAGAATta
agttgaaaatttttgcgaaattttctatagtttttctaaatttttgccAG
CCTGATTAATCAAGCTCGAATTCACAAGGCTAAGGTAAGATACAGCTTAT
GGCAATATAGAGTATTggtgctttaaagatttttatgtTTGCGGATTTTG
AAGTTTGCCTCTGAAttctggtttaaaaaaagcactgcacccgttaaaat
tttgtattaattttaattttttatttttacagccTCTAACATTGATGGGA
AGCTTTTTACTGTAATGTGCCAAAGCACTAGTAAACATCACTACTTTTCT
ATGTTGGAGCTGTCTCTAGTGGAAATGTTGAAATTAGAAAGCGACTTTAC
TGCAATTTCACCAATAATTACATCAAAAACACCCGTCACACCAAGTTCGC
ACGCTTTAGTTACTGGCCGTCACAGATTACAGTAAGTGATAAGTTTACCA
TTTTAATGTAAATGACAATTATTTTTACTgacgatgttcttaaaaaaagg
tATAGCTCTCAAAAGATTCTTATTCTAGGTAAATTAAAGGAGAATAGAAA
TATGGGTCTTATCATGTTGACAAAATAGCTCTAAATTAATTTGTGTGTAA
TTTGATAATACAAATTAAGGCCAAACTCTCATTGACTTATTCTAATTGTT
GtattaatttattcccttaaaaCCCTATTCACACTttgcttttaggggcg
gttcaaaactaggcTGTTTCAGAGACCTGTAGTTTATATAACAATGATat
cttgtttttcatttttacaattgtgattttaaatattttaggtTAAAAAT
GATCCGGGCAGAATCTATCAAAATGTGGCCCGATAATCACAACCTACCAC
GCTTTGACActgatgtaaacaaagatgCTTTAGCTAAGCTGGTGTCAACT
CTTAAGTCAAAAAGCTTGTTTGGACATTTGGATAAGAAAGCCATCAAAGC
CAAAGTTCTGTCGCACATGACGGATAGGCGGAAAACATCAAGAAAAATTG
ATTTCGTAtgtattgattttgattttcaaattattgttttctttattttg
ccaTCTTCCTATTTTTAATTTAGGTTATATTGGAACTGGCTATTTTTTCT
GCTTCTGACTTATTTTCTTTGTATGTTGTTTT Coding sequence (CDS) from alignment at sc0003753:2683..5714+ >TCONS_00042872 ID=TCONS_00042872|Name=TCONS_00042872|organism=Clytia hemisphaerica|type=CDS|length=1710bp|location=Sequence derived from alignment at sc0003753:2683..5714+ (Clytia hemisphaerica)
ATGGATTCGCGAAACATTAACTCCATGAACATTGAACAGTTATATGATTT
TCTCACTGAAAAATATTCAACAGAACTAGCAGACAAAGTCAAAGccTCTA
ACATTGATGGGAAGCTTTTTACTGTAATGTGCCAAAGCACTAGTAAACAT
CACTACTTTTCTATGTTGGAGCTGTCTCTAGTGGAAATGTTGAAATTAGA
AAGCGACTTTACTGCAATTTCACCAATAATTACATCAAAAACACCCGTCA
CACCAAGTTCGCACGCTTTAGTTACTGGCCGTCACAGATTACAgtTAAAA
ATGATCCGGGCAGAATCTATCAAAATGTGGCCCGATAATCACAACCTACC
ACGCTTTGACActgatgtaaacaaagatgCTTTAGCTAAGCTGGTGTCAA
CTCTTAAGTCAAAAAGCTTGTTTGGACATTTGGATAAGAAAGCCATCAAA
GCCAAAGTTCTGTCGCACATGACGGATAGGCGGAAAACATCAAGAAAAAT
TGATTTCGTAtgtattgattttgattttcaaattattgttttctttattt
tgccaTCTTCCTATTTTTAAATGGATTCGCGAAACATTAACTCCATGAAC
ATTGAACAGTTATATGATTTTCTCACTGAAAAATATTCAACAGAACTAGC
AGACAAAGTCAAAGccTCTAACATTGATGGGAAGCTTTTTACTGTAATGT
GCCAAAGCACTAGTAAACATCACTACTTTTCTATGTTGGAGCTGTCTCTA
GTGGAAATGTTGAAATTAGAAAGCGACTTTACTGCAATTTCACCAATAAT
TACATCAAAAACACCCGTCACACCAAGTTCGCACGCTTTAGTTACTGGCC
GTCACAGATTACAgtTAAAAATGATCCGGGCAGAATCTATCAAAATGTGG
CCCGATAATCACAACCTACCACGCTTTGACActgatgtaaacaaagatgC
TTTAGCTAAGCTGGTGTCAACTCTTAAGTCAAAAAGCTTGTTTGGACATT
TGGATAAGAAAGCCATCAAAGCCAAAGTTCTGTCGCACATGACGGATAGG
CGGAAAACATCAAGAAAAATTGATTTCGTAtgtattgattttgattttca
aattattgttttctttattttgccaTCTTCCTATTTTTAAATGGATTCGC
GAAACATTAACTCCATGAACATTGAACAGTTATATGATTTTCTCACTGAA
AAATATTCAACAGAACTAGCAGACAAAGTCAAAGccTCTAACATTGATGG
GAAGCTTTTTACTGTAATGTGCCAAAGCACTAGTAAACATCACTACTTTT
CTATGTTGGAGCTGTCTCTAGTGGAAATGTTGAAATTAGAAAGCGACTTT
ACTGCAATTTCACCAATAATTACATCAAAAACACCCGTCACACCAAGTTC
GCACGCTTTAGTTACTGGCCGTCACAGATTACAgtTAAAAATGATCCGGG
CAGAATCTATCAAAATGTGGCCCGATAATCACAACCTACCACGCTTTGAC
ActgatgtaaacaaagatgCTTTAGCTAAGCTGGTGTCAACTCTTAAGTC
AAAAAGCTTGTTTGGACATTTGGATAAGAAAGCCATCAAAGCCAAAGTTC
TGTCGCACATGACGGATAGGCGGAAAACATCAAGAAAAATTGATTTCGTA
tgtattgattttgattttcaaattattgttttctttattttgccaTCTTC
CTATTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042872-exon-sc0003753-1491911889:2683..3106 | TCONS_00042872-exon-sc0003753-1491911889:2683..3106 | Clytia hemisphaerica | exon |
| TCONS_00042872-exon-sc0003753-1510915933:2683..3106 | TCONS_00042872-exon-sc0003753-1510915933:2683..3106 | Clytia hemisphaerica | exon |
| TCONS_00042872-exon-sc0003753-1575043694:2683..3106 | TCONS_00042872-exon-sc0003753-1575043694:2683..3106 | Clytia hemisphaerica | exon |
| TCONS_00042872-exon-sc0003753-1491911889:4815..5013 | TCONS_00042872-exon-sc0003753-1491911889:4815..5013 | Clytia hemisphaerica | exon |
| TCONS_00042872-exon-sc0003753-1510915933:4815..5013 | TCONS_00042872-exon-sc0003753-1510915933:4815..5013 | Clytia hemisphaerica | exon |
| TCONS_00042872-exon-sc0003753-1575043694:4815..5013 | TCONS_00042872-exon-sc0003753-1575043694:4815..5013 | Clytia hemisphaerica | exon |
| TCONS_00042872-exon-sc0003753-1491911889:5374..5714 | TCONS_00042872-exon-sc0003753-1491911889:5374..5714 | Clytia hemisphaerica | exon |
| TCONS_00042872-exon-sc0003753-1510915933:5374..5714 | TCONS_00042872-exon-sc0003753-1510915933:5374..5714 | Clytia hemisphaerica | exon |
| TCONS_00042872-exon-sc0003753-1575043694:5374..5714 | TCONS_00042872-exon-sc0003753-1575043694:5374..5714 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003753 | supercontig | sc0003753:2683..5714 + |
Blast
The following BLAST results are available for this feature:
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