TCONS_00042875 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042875
Unique NameTCONS_00042875
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length678

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042875 ID=TCONS_00042875|Name=TCONS_00042875|organism=Clytia hemisphaerica|type=transcript|length=678bp
gttcagtcatttgtttggtcattttctgtcgactaatgcgatctaaaaat
tatggtaattttaagacatgccataacttacccgagaaaCTGAGCATCGT
TCCAAGAATAGAATCTGATATAGATAGGTCTAGTTCTGTTTTCTTTCTTG
TGTGAGCTTCGGTGGCAACGTTCAACCATTTGGCAATTTGTTGTGTTTCC
ATATTCAGGTTGTAGCCAAGGAGTTCGCATAATATTTTCTTGGTTTGGTC
CCAAGATTTCTCGGTTGTTTCCTCGGGAAGGTTCCTCAAAATTAAAGTAC
TTCTCAGTGAACGGTTCGTTTGGTTCTCTATCTGCTTTGTCTGGTTGACA
ATgatcttattttgttcttcaaGGGTAAGCTCCATAGTCGCCATTCTTCT
GGAGAGTTCAGTCATGTTGTTTGTATTAGTCGCAATGTTTTTATCAGACT
CCATAACTTTGTCTTCtaagttctttattttttcgttcaggtCGGACTTT
ATTTCCGAGATTATAGCATCCTTCTGTTTTTCCAGTGTTATATTGTTCTT
GGGAGGcatgatttcaaagataaagGTGGATTGAGAAGGCTGAAAACTGT
GAAAATTGATGTAAATTTAAGCCTTTTTCTGTTAGCTGAAGCTcaagccg
ccatcttgaaaatcGTCCGCCGGCGAAT
Run BLAST on NCBI

transcript from alignment at sc0003754:6200..6877-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042875 ID=TCONS_00042875|Name=TCONS_00042875|organism=Clytia hemisphaerica|type=transcript|length=678bp|location=Sequence derived from alignment at sc0003754:6200..6877- (Clytia hemisphaerica)
GTTCAGTCATTTGTTTGGTCATTTTCTGTCGACTAATGCGATCTAAAAAT
TATGGTAATTTTAAGACATGCCATAACTTACCCGAGAAACTGAGCATCGT
TCCAAGAATAGAATCTGATATAGATAGGTCTAGTTCTGTTTTCTTTCTTG
TGTGAGCTTCGGTGGCAACGTTCAACCATTTGGCAATTTGTTGTGTTTCC
ATATTCAGGTTGTAGCCAAGGAGTTCGCATAATATTTTCTTGGTTTGGTC
CCAAGATTTCTCGGTTGTTTCCTCGGGAAGGTTCCTCAAAATTAAAGTAC
TTCTCAGTGAACGGTTCGTTTGGTTCTCTATCTGCTTTGTCTGGTTGACA
ATGATCTTATTTTGTTCTTCAAGGGTAAGCTCCATAGTCGCCATTCTTCT
GGAGAGTTCAGTCATGTTGTTTGTATTAGTCGCAATGTTTTTATCAGACT
CCATAACTTTGTCTTCTAAGTTCTTTATTTTTTCGTTCAGGTCGGACTTT
ATTTCCGAGATTATAGCATCCTTCTGTTTTTCCAGTGTTATATTGTTCTT
GGGAGGCATGATTTCAAAGATAAAGGTGGATTGAGAAGGCTGAAAACTGT
GAAAATTGATGTAAATTTAAGCCTTTTTCTGTTAGCTGAAGCTCAAGCCG
CCATCTTGAAAATCGTCCGCCGGCGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026658XLOC_026658Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042875-exon-sc0003754-1575043694:6200..6877TCONS_00042875-exon-sc0003754-1575043694:6200..6877Clytia hemisphaericaexon
TCONS_00042875-exon-sc0003754-1510915933:6200..6877TCONS_00042875-exon-sc0003754-1510915933:6200..6877Clytia hemisphaericaexon
TCONS_00042875-exon-sc0003754-1491911889:6200..6877TCONS_00042875-exon-sc0003754-1491911889:6200..6877Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003754supercontigsc0003754:6200..6877 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.295004	0.400135	0	0	0	0	0	0	0	0.160809	0.178147	0	0.0926304	0	0.433614	0.288706	0.567966	0.287856	0	0	0.254424	0.12256	0.190979	0.255564	0.146163	0.531862	0.218081	0.503339	0	0.457346
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042875 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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