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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042876 ID=TCONS_00042876|Name=TCONS_00042876|organism=Clytia hemisphaerica|type=transcript|length=2352bp
GCTAAGTTTCATAATTTGTGGAAGATGATCAGATATGTTGCAAATAAGGT
TAGAGgatgatatttctttgtttataaaataaaatttgtttataaaaatg
ttgtCAATAAGGGTTTTAGAAGTTGGAGTGATTCTTGTAGGCCTGGTGAT
TGTTGGTAACATGCAATGAGAAAGGTTACAGCTGAGAAAATTGTCAACCT
CTGTGTTTGATTCAACAGTTAATAGGTCCAGGTTGAAATCACCAAAGAtg
atagcttttttattttcagcgaGAATTTTGTCAAGTTAGTCTGAGTAAAG
GCTGAGGAAATTTTCTGAGTCAGCCAGAGGGTGCTTGTAGATGCATActa
ttatgaaatttttgtcgTATACAACTTCTCTTACAACAGACTCAATTTGG
TTAGTTTTANATTTTCTGAGTCAGCCAGAGGGTGCTTGTAGATGCATAct
attatgaaatttttgtcgTATACAACTTCTCTTACAACAGACTCAATTTG
GTTAGTTTTATAAATGCAGAGGTCTGGTCTTGGTAGCGTATCATAGCTAT
CCGAGATATAGATTCTAGCTCCTCCCCTAGATGATTTGGTACAACAGTCA
AAGTGTGTGTAATTGAGAATTTTTGCAGCACTTTGAGCTAATTTTTTGTC
CTTGAAACCAGTTTCAGTTATACCTATGAAATCAAATGGTAGTTCACAGT
TGTTGAGAGTAGAAACTAGTTCAGCATGGTGAAGATTGAGAGAGGCAATT
TTAAGATGTAGAGTGGAAATTGAGTTATTGTTCTTATGTTTTTCATTGAG
TTCACTGAGTGATAGATAAGGAcattgaaaattaaaagtatTATTGTCTT
CATCATCTTGAGTGAGAGCAGAATCTATATCCCTGTAAAATTGGAGGTTA
ATGTCATTAAATGGATCTAAGAAAGGATCAAAATTCTTACCTTGTAAAGT
GAGTTTGAGACTCTCGTGGGGGATTTGTCAAAAAGGTACCGCTGAATTGA
AGCATTTTTGGCAGAACCAGCTGTCAGGATGTTGTTGTAGACGTTGGTAC
TCCGTCTCCGATGTATTATTACAGCTGATGTGGATCCAAAAATCACAGGT
GTCACAGCAGACTGCTTTGTGATTAGAAGCTACAGGATTAGAACATATTC
CACAAGGGTTTTTGATATTACGTTTTGACTTGGGGGCTTTCTTAGACTTT
CTAGGCATAGATGAGAAGATGTGAGTGGAGAGAAAAGAGATAAATAACAG
ATATAGAAAGGTGAAGGTGAGAGGCCTGAACCTGAGCGTATTTAAAATAA
ATAGTTATGAATGTAAGGCACTGGCTGGTGATGAAAGTCAAGCAAGAGCT
AGTACTAAGATCACATTAAATCAAGAGGCAGTGAGCGAGCCAGGCAGAAA
AAGGCTGGACATTAGTGCAGAGCCAAGGAATGTAAGCTTTAAAGCCCAGA
ACCAATATAAACAATATATAATATTAATATAGTCAAGAATGAAGAAACCT
GATGAACATGATTTTAGTAACTCAAATGTCAAAAAGCTTTATAGAATGCG
AATTTCGTGCTGTTTTCTTCCTTAACCATAAGTTTTGCTGGGAAGGTAAG
GTAGGCTTGTATGATAGTGTTCTGAGGGTCTTCGATAAGTTCTTTtctgg
ccatcaaagccttatttCGTCGTTCCATAATAGAGTTTGAAAACATTTGA
TCAATCTTGAATTTGATTTCTCTGTCTTTGGATTTGAGTTTGTTTATTGT
ATTAAGTACAAACTGAGCATCGTTCCAAGAATAGAATCTGATGTAGATAG
GTCTAGTTCTGTTTTCTTTCTTGTGTGAGCTTCGGTGGCAACGTTCAACC
ATATTGGCAATTTGTTGTGTTTCCATATTCAGGTTGTAGCCAAGGAGTTC
GCATAATATTTTCTTGGTTTGGTCCCAAGATTTCTCGGTTGTTTCCTCGG
GAAGGTTCCTCAAAATTAAAGTACTTCTCAGTGAACGGTTCGTTTGGTTC
TCTATCTGCTTTGTCTGGTTGACAATgatcttattttgttcttcaaGGGT
AAGCTCCATAGTCGCCATTCTTCTGGAGAGTTCAGTCATGTTGTTTGTAT
TAGTCGCAATGTTTTTATCAGACTCCATAACTTTGTCTTCtaagttcttt
attttttcgttcaggtCGGACTTTATTTCCGAGATTATAGCATCCTTCTG
TTTTTCCAGTGTTATATTGTTCTTGGGAGGcatgatttcaaagataaagG
TGGATTGAGAAGGCTGAAAACTGTGAAAATTGATGTAAATTTAAGCCTTT
TTCTGTTAGCTGAAGCTcaagccgccatcttgaaaatcGTCCGCCGGCGA
AT Run BLAST on NCBI transcript from alignment at sc0003754:6200..9813- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042876 ID=TCONS_00042876|Name=TCONS_00042876|organism=Clytia hemisphaerica|type=transcript|length=3614bp|location=Sequence derived from alignment at sc0003754:6200..9813- (Clytia hemisphaerica)
GCTAAGTTTCATAATTTGTGGAAGATGATCAGATATGTTGCAAATAAGGT
TAGAGGATGATATTTCTTTGTTTATAAAATAAAATTTGTTTATAAAAATG
TTGTCAATAAGGGTTTTAGAAGTTGGAGTGATTCTTGTAGGCCTGGTGAT
TGTTGGTAACATGCAATGAGAAAGGTTACAGCTGAGAAAATTGTCAACCT
CTGTGTTTGATTCAACAGTTAATAGGTCCAGGTTGAAATCACCAAAGATG
ATAGCTTTTTTATTTTCAGCGAGAATTTTGTCAAGTTAGTCTGAGTAAAG
GCTGAGGAAATTTTCTGAGTCAGCCAGAGGGTGCTTGTAGATGCATACTA
TTATGAAATTTTTGTCGTATACAACTTCTCTTACAACAGACTCAATTTGG
TTAGTTTTANATTTTCTGAGTCAGCCAGAGGGTGCTTGTAGATGCATACT
ATTATGAAATTTTTGTCGTATACAACTTCTCTTACAACAGACTCAATTTG
GTTAGTTTTATAAATGCAGAGGTCTGGTCTTGGTAGCGTATCATAGCTAT
CCGAGATATAGATTCTAGCTCCTCCCCTAGATGATTTGGTACAACAGTCA
AAGTGTGTGTAATTGAGAATTTTTGCAGCACTTTGAGCTAATTTTTTGTC
CTTGAAACCAGTTTCAGTTATACCTATGAAATCAAATGGTAGTTCACAGT
TGTTGAGAGTAGAAACTAGTTCAGCATGGTGAAGATTGAGAGAGGCAATT
TTAAGATGTAGAGTGGAAATTGAGTTATTGTTCTTATGTTTTTCATTGAG
TTCACTGAGTGATAGATAAGGACATTGAAAATTAAAAGTATTATTGTCTT
CATCATCTTGAGTGAGAGCAGAATCTATATCCCTGTAAAATTGGAGGTTA
ATGTCATTAAATGGATCTAAGAAAGGATCAAAATTCTTACCTTGTAAAGT
GAGTTTGAGACTCTCGTGGGGGATTTGTCAAAAAGGTACCGCTGAATTGA
AGCATTTTTGGCAGAACCAGCTGTCAGGATGTTGTTGTAGACGTTGGTAC
TCCGTCTCCGATGTATTATTACAGCTGATGTGGATCCAAAAATCACAGGT
GTCACAGCAGACTGCTTTGTGATTAGAAGCTACAGGATTAGAACATATTC
CACAAGGGTTTTTGATATTACGTTTTGACTTGGGGGCTTTCTTAGACTTT
CTAGGCATAGATGAGAAGATGTGAGTGGAGAGAAAAGAGATAAATAACAG
ATATAGAAAGGTGAAGGTGAGAGGCCTGAACCTGAGCGTATTTAAAATAA
ATAGTTATGAATGTAAGGCACTGGCTGGTGATGAAAGTCAAGCAAGAGCT
AGTACTAAGATCACATTAAATCAAGAGGCAGTGAGCGAGCCAGGCAGAAA
AAGGCTGGACATTAGTGCAGAGCCAAGGAATGTAAGCTTTAAAGCCCAGA
ACCAATATAAACAATATATAATATTAATATAGTCAAGAATGAAGAAACCT
GATGAACATGATTTTAGTAACTCAAATGTCAAAAAGCTTTATAGAATGCG
AATTTCGTGCTGTTTTCTTCCTTAACCATAAGTTTTGCTGGGAAGGTAAG
GTAGGCTTGTATGATAGTGTTCTGAGGGTCTTCGATAAGTTCTTTTCTGG
CCATCAAAGCCTTATTTCGTCGTTCCATAATAGAGTTTGAAAACATTTGA
TCAATCTTGAATTTGATTTCTCTGTCTTTGGATTTGAGTTTGTTTATTGT
ATTAAGTACAAACTGAGCATCGTTCCAAGAATAGAATCTGATGTAGATAG
GTCTAGTTCTGTTTTCTTTCTTGTGTGAGCTTCGGTGGCAACGTTCAACC
ATATTGGCAATTTGTTGTGTTTCCATATTCAGGTAGTAACCAAGGAGTTC
ACATAATATTTTCTTGGTTTGGNAATTACCATAATTTTTAGATCGCATTA
GTCGACAGAAAATGACCAAACAAATGACTGAACGTGAAGGGTACTATGAT
GTAGTTTCTAACCTGATGTGTACTCAAGGGGATTAACGCGGGGTCAAAAT
GCTTGCAACGTTACAAATCATTTTCAGAAGCTCATTTTAGGCTCAAACAA
AGCGTATGACTAAGTAGAATAGGATTCAGTCTAGGCAGATATTTTTTCAT
TTTGAAATTTTGCGTAATTCGCAAAAATCCTCAATTTTGCGCTATTTTGA
TGACGTCATAAAAATTGAAATCCTTATAACTTTTGATACAATTATCAAAA
TAATTTCAAATTTTGACCAAAGATGCATATCATTAATTTTTTCAAAATTA
AATAAAACAATTTATGAAATTTGATGACGTCATCACTTTTAAGGCAAAAA
ACTAAAATCCTCAAAAAATAATGACGTCATCAAGATTTTGAAAATTTTTG
AATTTTTTTTGAAAATTTGCATTGAAATGCATCTTTANTGAAATGCATCT
TTGGTGAAAGTTTGAAATTATTTTGATGATTCTATTAAAAGTTATTTGAA
TTTCAATTTTTATGACGTCATCAAAATAGCGCAAAATTGAGGATTTTTGC
GAATTACGCAAAATTTCAAAATGATAAAACATCTGCCTAGACTGAATCTT
ATTTTAATTAGTTATAGGCTTCGTTTGAGCCCAAAAGGAGCTTCTGAAAA
TGATTTGTAACGTTGCAAGAATTTTGACCTCCACGAACCCGCCTTATTCC
CGTGGAGTAACCTAATTGTTTTTTCGCTGATTTTCGCGAAAAACCGCAAA
AACTGATTATTACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNATAGTACCCTTCACGTTCAGTCATTTGT
TTGGTCATTTTCTGTCGACTAATGCGATCTAAAAATTATGGTAATTTTAA
GACATGCCATAACTTACCCGAGAAACTGAGCATCGTTCCAAGAATAGAAT
CTGATATAGATAGGTCTAGTTCTGTTTTCTTTCTTGTGTGAGCTTCGGTG
GCAACGTTCAACCATTTGGCAATTTGTTGTGTTTCCATATTCAGGTTGTA
GCCAAGGAGTTCGCATAATATTTTCTTGGTTTGGTCCCAAGATTTCTCGG
TTGTTTCCTCGGGAAGGTTCCTCAAAATTAAAGTACTTCTCAGTGAACGG
TTCGTTTGGTTCTCTATCTGCTTTGTCTGGTTGACAATGATCTTATTTTG
TTCTTCAAGGGTAAGCTCCATAGTCGCCATTCTTCTGGAGAGTTCAGTCA
TGTTGTTTGTATTAGTCGCAATGTTTTTATCAGACTCCATAACTTTGTCT
TCTAAGTTCTTTATTTTTTCGTTCAGGTCGGACTTTATTTCCGAGATTAT
AGCATCCTTCTGTTTTTCCAGTGTTATATTGTTCTTGGGAGGCATGATTT
CAAAGATAAAGGTGGATTGAGAAGGCTGAAAACTGTGAAAATTGATGTAA
ATTTAAGCCTTTTTCTGTTAGCTGAAGCTCAAGCCGCCATCTTGAAAATC
GTCCGCCGGCGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042876-exon-sc0003754-1575043694:7932..9813 | TCONS_00042876-exon-sc0003754-1575043694:7932..9813 | Clytia hemisphaerica | exon |
| TCONS_00042876-exon-sc0003754-1575043694:6200..6669 | TCONS_00042876-exon-sc0003754-1575043694:6200..6669 | Clytia hemisphaerica | exon |
| TCONS_00042876-exon-sc0003754-1510915933:7932..9813 | TCONS_00042876-exon-sc0003754-1510915933:7932..9813 | Clytia hemisphaerica | exon |
| TCONS_00042876-exon-sc0003754-1510915933:6200..6669 | TCONS_00042876-exon-sc0003754-1510915933:6200..6669 | Clytia hemisphaerica | exon |
| TCONS_00042876-exon-sc0003754-1491911889:7932..9813 | TCONS_00042876-exon-sc0003754-1491911889:7932..9813 | Clytia hemisphaerica | exon |
| TCONS_00042876-exon-sc0003754-1491911889:6200..6669 | TCONS_00042876-exon-sc0003754-1491911889:6200..6669 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003754 | supercontig | sc0003754:6200..9813 - |
Blast
The following BLAST results are available for this feature:
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