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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042887 ID=TCONS_00042887|Name=TCONS_00042887|organism=Clytia hemisphaerica|type=transcript|length=1047bp
TGATACTTGATTAATGAATTAATGATCTTCTTTCCTTCCTAAGTCCAGAA
GTAACACCTCCTTCGTGTTTACCGGATTCTTATCTTCTTCGCTGCGTGAC
CTTCCGCCATCTTTaaaaattgatgtagaaaagtgaattgacgtcaaata
agtAGTTTTacgtcaaaaatttaaaattcaactAACTTACAAAAAGTGTT
TGTCTATCTACTTTCATAACTACCATCAATCTACCTTATCCGGCATCAAG
AGAAGAATAACTTGCCATCATGTCCTCCAAGAAAAACTTTGCTGTATATG
TAAGtaataaaaaacgacaaattacggAAAAAATGGTGAACATCTGCTCT
GAGGAACCACGGTCTGCCTTGGTACTATACCTTTCTAGATCGGGAGGAAG
TCGTGGTGAACACACGTTCCGGTCATCGATCGAAATATACGGTGCTATCT
CTAAAAAGCTAAAcgaagaaacaaagaaaaaaaataaaagagagaTTGCC
GATTTATTGGTTGAAGAAGGTAAATACTTTTGCCCGTTAAAGTGGTAGCA
AGAGAACTGTAAAATATGTTTGAATATACTCAATAAAGCTTCTTTCCATT
TGTACAATTTGTAGGCTTAGGGTACGTTACACTTTGAATATACTCAATAA
AGCTTCAACCCATTTGTACCGAGACAGGCTACTCCGATATTAGATCGTTT
GCTTTTGTTTTAAGATATAAAATCTCTGTCGTGCTCAGCATCGGCATTTT
TCAACTTATGTTCGTTAAGAGTAGCGTTTAATGAAAAGGATGAATCCAGT
TTTTGGGGAACAATGATGCCGTTTTCTAGTTTCTTGCAATTCATAACACA
AACAAAACCGTTCTTCAATTGAATTTTTTTTTTCATTTCAGCTGGTCTTG
AATGGCTTAAGCCAAGTGAACGCCAGTCGGCCACCATGCGCGCTCCAGCC
ACTCCTTCACTTCCCAACCCGACGGACCCGTCACCTCCATCTAGTTGTGG
ACCGGACGAGGATTCAAATCTTGAACGCCAGCCGGCCACCAAGCGCG Run BLAST on NCBI transcript from alignment at sc0003755:5745..7704+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042887 ID=TCONS_00042887|Name=TCONS_00042887|organism=Clytia hemisphaerica|type=transcript|length=1960bp|location=Sequence derived from alignment at sc0003755:5745..7704+ (Clytia hemisphaerica)
TGATACTTGATTAATGAATTAATGATCTTCTTTCCTTCCTAAGTCCAGAA
GTAACACCTCCTTCGTGTTTACCGGATTCTTATCTTCTTCGCTGCGTGAC
CTTCCGCCATCTTTaaaaattgatgtagaaaagtgaattgacgtcaaata
agtAGTTTTacgtcaaaaatttaaaattcaactAACTTACAAAAAGTGTT
TGTCTATCTACTTTCATAACTACCATCAATCTACCTTATCCGGCATCAAG
AGAAGAATAACTTGCCATCATGTCCTCCAAGAAAAACTTTGCTGTATATG
TAAGtaataaaaaacgacaaattacggAAAAAATGGTGAACATCTGCTCT
GAGGAACCACGGTCTGCCTTGGTACTATACCTTTCTAGATCGGGAGGAAG
TCGTGGTGAACACACGTTCCGGTCATCGATCGAAATATACGGTGCTATCT
CTAAAAAGCTAAAcgaagaaacaaagaaaaaaaataaaagagagaTTGCC
GATTTATTGGTTGAAGAAGGTAAATACTTTTGCCCGTTAAAGTGGTAGCA
AGAGAACTGTAAAATATGTTTGAATATACTCAATAAAGCTTCTTTCCATT
TGTACAATTTGTAGGCTTAGGGTACGTTACACTTTGAATATACTCAATAA
AGCTTCAACCCATTTGTACCGAGACAGGCTACTCCGATATTAGATCGTTT
GCTTTTGTTTTAAGATATAAAATCTCTGTCGTGCTCAGCATCGGCATTTT
TCAACTTATGTTCGTTAAGAGTAGCGTTTAATGAAAAGGATGAATCCAGT
TTTTGGGGAACAATGATGCCGTTTTCTAGTTTCTTGCAATTCATAACACA
AACAAAACCGTTCTTCAATTGAATTTTTTTTTTCATTTCAGCTGGTCTTG
AATGGCTTAAGCCAAGGTAATTGTAATTTGTATTACTGCTGCTTATTATA
TATCTTTCACACAACGGTTTCACAAAAACCTTTATAACACTCCTTGAACA
TCTTTCATCAGCTTTACTAGGGGGAGGTTTCTATTGTCTTTATGTAGGGA
ATAAATCTTTTTAAAAGAAAAATGACCCTTTTACTCTCAATCGTCTTGTA
GAGTGGAGTGACTCTTTTCTATGAGCTGATGACATCGAAGAAATGTAAAG
GTTTAAGCCGGGGGGGGCACACTATAGCGTCAGTTAAGACTAGTTTTAAG
TATAATCCCTATAACATCCGATTGTTTTCGTCAAATCAGTGTTTCTCTTT
TGGCTTCCTTACACGTGAACTTACCCTGAAAGGCGGCACTTAACCGTATC
TTCCATTTGCCTAAGTACCCGCCCTCTGGGCTTCGGCTACAATGTAACAA
AATGCAACAAAACGTGGATCCATTTTTAATTTTGTTCTTTGCATTTTCAT
TTTTTTTCAATTTAAGTAGTGAACGCCAGCCGGCCACCAAGCGCGCTTGT
CCAGCTGTAGCCGAGAAACCGGGAACTTTGAAGATATATGTTATAAAAAC
CTAATACGTATTTTTTCCCAAGTAGCATTTTCATTTATTTTCATTTCAAT
TAGTGAACGCCAGTCGGCCACCATGCGCGCTCCAGCCACTCCTTCACTTC
CCAACCCGACGGACCCGTCACCTCCATCTAGTTGTGGACCGGACGAGGAT
TCAAATCTGTAAGTCATTATATTTTCATCAAAATATGCCTTTTGCCTTTT
TAGGCCCTAAAAATTGGTTGTTTTGCTTTTTTTTGTAACCGGAACTAAAT
TTTGAAATTGTGATTTTTAAGACCCTTAGCAAGACTTACCCTGAAAGGCG
GCACGTAAACGTATTTTCCATTTGCCTAAGTACCCGCCCTCTGGGCTTCG
GCTACATTGTAACAAAATGCAACAAAACGTGGATCCATTTTTAATTTTGT
TCTTTGCATTTTCATTTTTTTTCAATTTAAGTAGTGAACGCCAGCCGGCC
ACCAAGCGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042887-exon-sc0003755-1491911889:5745..6660 | TCONS_00042887-exon-sc0003755-1491911889:5745..6660 | Clytia hemisphaerica | exon |
| TCONS_00042887-exon-sc0003755-1510915933:5745..6660 | TCONS_00042887-exon-sc0003755-1510915933:5745..6660 | Clytia hemisphaerica | exon |
| TCONS_00042887-exon-sc0003755-1575043694:5745..6660 | TCONS_00042887-exon-sc0003755-1575043694:5745..6660 | Clytia hemisphaerica | exon |
| TCONS_00042887-exon-sc0003755-1491911889:7298..7402 | TCONS_00042887-exon-sc0003755-1491911889:7298..7402 | Clytia hemisphaerica | exon |
| TCONS_00042887-exon-sc0003755-1510915933:7298..7402 | TCONS_00042887-exon-sc0003755-1510915933:7298..7402 | Clytia hemisphaerica | exon |
| TCONS_00042887-exon-sc0003755-1575043694:7298..7402 | TCONS_00042887-exon-sc0003755-1575043694:7298..7402 | Clytia hemisphaerica | exon |
| TCONS_00042887-exon-sc0003755-1491911889:7679..7704 | TCONS_00042887-exon-sc0003755-1491911889:7679..7704 | Clytia hemisphaerica | exon |
| TCONS_00042887-exon-sc0003755-1510915933:7679..7704 | TCONS_00042887-exon-sc0003755-1510915933:7679..7704 | Clytia hemisphaerica | exon |
| TCONS_00042887-exon-sc0003755-1575043694:7679..7704 | TCONS_00042887-exon-sc0003755-1575043694:7679..7704 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003755 | supercontig | sc0003755:5745..7704 + |
Blast
The following BLAST results are available for this feature:
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