TCONS_00042895 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042895
Unique NameTCONS_00042895
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042895 ID=TCONS_00042895|Name=TCONS_00042895|organism=Clytia hemisphaerica|type=transcript|length=1850bp
ATCAggaatgaagaaaaatttgccGATTTTCGTAAAATTCCAATGTATGG
TTTCCCAAGCAAGAAGAAAAGACTCTATGAAAGGCAGCGCTGGATCAAAT
CCATTCCTTACCTTACCGAAGAGATCGTCAATAATAACAATACACCAGCG
GTTTGCCGTAAACATTGGCCAGAAAACGCTACTTTTGAAACAGGTATGTA
ACCTTATTGCTTTCGTGGAATATTTGAACAAGCTAAAGTCTTCGGATAAG
TTTTTCTCTGTTCATAGCTTATCTATTAACATATTTTCGATATTATAAAA
AATCCAAATCTGatgcttgtttttgttgaaaatttgtatttatAATTCAC
TCATATAGTCCCATAAGATACAAATCTACAACACAAAGTTCAATTAACTC
TTAAACGCTATGTTTATTTCTTTCTTTAGGTCAGAACGGCCTTCCTCGAC
CAATCGAACCACCATCAAGCTTTGATAATATACCGTCCAGTTCCATTCCA
ACACCTCTTCCACCTCCAAGACCAATCGCGACAAACTAAAATTTGAGGAC
ATCGCCAACTCCGATCGATTGACATTACTCGGTTTGCCTATCGTCGCATT
TCAAGTCAATGGTGAACAGTGGATTCAATCTGGTGAATATATATCAGGAA
TACCATCATTTTCGCTGAAAATATCGAAAGGTTTGAGATTCATTGCGTAC
AAAATGGGTGTTCAATGTACCATAAAATCCCTTTCGAAAAATCGTATCAC
TCATCTCGATTCATGGTCGTGTCTTGAGGAAGcactttgctttttgaaaa
atagtgaATTCACTCGGCATCAAACCATTTTACAAGAATAAATAGAATCT
ATGAAACCACCTCAAGTCGGAAAAAAACTCTATTCTCTGCAAGTACTGAT
GTGAGCATTCGGCTACGATTCCTGTGAAAGCTATGACTGCTGCTTTTTTG
TTCGATCAAATTCAGCAAACTATTGCTCTGTTGCGTGGCGCTGGTGCCGA
TATCAAATCAATAATCGTCGATGGNgtttttattcaaaatgattCCTGTG
AAAGCTATGACTGCTGCTTTTTTGTTCGATCAAATTCAGCAAACTATTGC
TCTGTTGCGTGGCGCTGGTGCCGATATCAAATCAATAATCGTCGATGGAA
ATCGAACGAACCAGAATTTCTTCAAGCAGTTTGATACGGTCACAGACAAA
CCCTGGTTGACAACTGATGGTATTTTCCttctgttcgatttggttcacCT
GATTAAAAGTATTCGAAATAATTGGTTAACAGAGAAGACTGGCCAACTCA
CATTCAAAGAAGATAATGATACATTCATTGCCATGTGGTCTGACCTTATC
CGATTACACGAAGTTGAAAACATGTCAAACTTCTGCGGAGTTCGTGGCTT
ATCAAAGTTGACCGAAGTCGCCGTACGCCCCAAACCGGTCGAACGGCAAC
GTGTATCGACATGTTTCCGTGTTTTTTGTGAAGAGACGGTAGCAGCACTT
AAAATTCACCCACATATGCAAAACATGAATGTCACCGGCACTGTCAAATT
CATCGAAAAAGTCACCACTATGTGGAAGATCTTAAATGTTCGAACCGTTG
GGAATTTGTATTTATAATTCACTCATAGGCCCATAAGATATTATCGAACA
TCTTTCTGAACAATTTCTGCAAATCGCAGACGCATCGCTCCTCGAAGGAG
ACGAGCCAGAAAGTTCtaaagctaaaagaaaaatgaaacatcttTTTCTA
TCATCACACTCTGAGTGCATCCAGTTCTTTCAATTTTCTatagtttattt
ttttaaataaagtgttCAGATTTCATTGTACTTAGGATATCGTAGTGAAA
Run BLAST on NCBI

transcript from alignment at sc0003759:4249..6098-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042895 ID=TCONS_00042895|Name=TCONS_00042895|organism=Clytia hemisphaerica|type=transcript|length=1850bp|location=Sequence derived from alignment at sc0003759:4249..6098- (Clytia hemisphaerica)
ATCAGGAATGAAGAAAAATTTGCCGATTTTCGTAAAATTCCAATGTATGG
TTTCCCAAGCAAGAAGAAAAGACTCTATGAAAGGCAGCGCTGGATCAAAT
CCATTCCTTACCTTACCGAAGAGATCGTCAATAATAACAATACACCAGCG
GTTTGCCGTAAACATTGGCCAGAAAACGCTACTTTTGAAACAGGTATGTA
ACCTTATTGCTTTCGTGGAATATTTGAACAAGCTAAAGTCTTCGGATAAG
TTTTTCTCTGTTCATAGCTTATCTATTAACATATTTTCGATATTATAAAA
AATCCAAATCTGATGCTTGTTTTTGTTGAAAATTTGTATTTATAATTCAC
TCATATAGTCCCATAAGATACAAATCTACAACACAAAGTTCAATTAACTC
TTAAACGCTATGTTTATTTCTTTCTTTAGGTCAGAACGGCCTTCCTCGAC
CAATCGAACCACCATCAAGCTTTGATAATATACCGTCCAGTTCCATTCCA
ACACCTCTTCCACCTCCAAGACCAATCGCGACAAACTAAAATTTGAGGAC
ATCGCCAACTCCGATCGATTGACATTACTCGGTTTGCCTATCGTCGCATT
TCAAGTCAATGGTGAACAGTGGATTCAATCTGGTGAATATATATCAGGAA
TACCATCATTTTCGCTGAAAATATCGAAAGGTTTGAGATTCATTGCGTAC
AAAATGGGTGTTCAATGTACCATAAAATCCCTTTCGAAAAATCGTATCAC
TCATCTCGATTCATGGTCGTGTCTTGAGGAAGCACTTTGCTTTTTGAAAA
ATAGTGAATTCACTCGGCATCAAACCATTTTACAAGAATAAATAGAATCT
ATGAAACCACCTCAAGTCGGAAAAAAACTCTATTCTCTGCAAGTACTGAT
GTGAGCATTCGGCTACGATTCCTGTGAAAGCTATGACTGCTGCTTTTTTG
TTCGATCAAATTCAGCAAACTATTGCTCTGTTGCGTGGCGCTGGTGCCGA
TATCAAATCAATAATCGTCGATGGNGTTTTTATTCAAAATGATTCCTGTG
AAAGCTATGACTGCTGCTTTTTTGTTCGATCAAATTCAGCAAACTATTGC
TCTGTTGCGTGGCGCTGGTGCCGATATCAAATCAATAATCGTCGATGGAA
ATCGAACGAACCAGAATTTCTTCAAGCAGTTTGATACGGTCACAGACAAA
CCCTGGTTGACAACTGATGGTATTTTCCTTCTGTTCGATTTGGTTCACCT
GATTAAAAGTATTCGAAATAATTGGTTAACAGAGAAGACTGGCCAACTCA
CATTCAAAGAAGATAATGATACATTCATTGCCATGTGGTCTGACCTTATC
CGATTACACGAAGTTGAAAACATGTCAAACTTCTGCGGAGTTCGTGGCTT
ATCAAAGTTGACCGAAGTCGCCGTACGCCCCAAACCGGTCGAACGGCAAC
GTGTATCGACATGTTTCCGTGTTTTTTGTGAAGAGACGGTAGCAGCACTT
AAAATTCACCCACATATGCAAAACATGAATGTCACCGGCACTGTCAAATT
CATCGAAAAAGTCACCACTATGTGGAAGATCTTAAATGTTCGAACCGTTG
GGAATTTGTATTTATAATTCACTCATAGGCCCATAAGATATTATCGAACA
TCTTTCTGAACAATTTCTGCAAATCGCAGACGCATCGCTCCTCGAAGGAG
ACGAGCCAGAAAGTTCTAAAGCTAAAAGAAAAATGAAACATCTTTTTCTA
TCATCACACTCTGAGTGCATCCAGTTCTTTCAATTTTCTATAGTTTATTT
TTTTAAATAAAGTGTTCAGATTTCATTGTACTTAGGATATCGTAGTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026666XLOC_026666Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042895-exon-sc0003759-1575043694:4249..6098TCONS_00042895-exon-sc0003759-1575043694:4249..6098Clytia hemisphaericaexon
TCONS_00042895-exon-sc0003759-1510915933:4249..6098TCONS_00042895-exon-sc0003759-1510915933:4249..6098Clytia hemisphaericaexon
TCONS_00042895-exon-sc0003759-1491911889:4249..6098TCONS_00042895-exon-sc0003759-1491911889:4249..6098Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003759supercontigsc0003759:4249..6098 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.339557	0.295405	0.486421	0.293405	0.201429	0.553349	0.232995	0.249978	0.102758	0.287584	0.224548	0.22361	0.334233	0.169265	0.136977	0.229899	0.0750911	0.217971	0.0988631	0.655701	0.245339	0.126832	0.0436512	0.169465	1.16441	0.967689	0.195471	0	0.143263	0.183688
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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