TCONS_00042899 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042899
Unique NameTCONS_00042899
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length797

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042899 ID=TCONS_00042899|Name=TCONS_00042899|organism=Clytia hemisphaerica|type=transcript|length=797bp
TTAGAATAGCCCAACAATCACCATCGAATTCAGTGTCACCTTTGGTTTCA
CCCAAACGACTCAATAAACCGAACGGAAAAGGTCGAGACCTACTTCATTT
GAGAAGAGCTGATGGGAAGACACCACTTGATATTTGCCAAGAACCGTCGG
CGATGAAaaccttgttgaaaagatatgagAATGTGGAGTCATCTTCTGAC
TATACTAACGTCTCCATTGTTGCAAATCAACAGGTTGCTGTGAGTAGCAT
AAATAAAGATATGTACCAGAGTTTCGTTTCACCTGAACCTCAGAATATGG
AATTCTTTTTACAAATACTTTTGCAACTTATTACCAATTACCGGGACTCG
AACATAGACGGCTTAAGATGCAATTCGAGCCAACTTGAAGCCCAATACAA
TGATTTATTGATGCATGTCAAATTACTGAATGGGGATAAGATACCCCTCA
AATGCAAACTGACTTTGAAACAAATTAAACGCGTTTTGTTTAGCTAAGAG
AGAAGTATTACATATGATTTTATTACTGAAGGGTTTTATTCATTCATATT
TCAGAGGTCAATACGGGGATTTGTTAACAGCAATTTGACGATTATTGTAA
TGCTCGTctcttttagttttttaaagagGAGTCTTCACTCTTTTATGTGT
CGGTCATATCGACCTACAGTTTATGAAATTAGAAGCTACAACCCCAAGAC
TATGGAGTCGATTCAATACTATGTAGTCAGATTACTCTGACCTCTTTTTA
CCCAACCCAAGGCAAACTTTACCGTTATAATGGTAGGTATTCATTCT
Run BLAST on NCBI

protein sequence of TCONS_00042899-protein

>TCONS_00042899-protein ID=TCONS_00042899-protein|Name=TCONS_00042899-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
RIAQQSPSNSVSPLVSPKRLNKPNGKGRDLLHLRRADGKTPLDICQEPSA
MKTLLKRYENVESSSDYTNVSIVANQQVAVSSINKDMYQSFVSPEPQNME
FFLQILLQLITNYRDSNIDGLRCNSSQLEAQYNDLLMHVKLLNGDKIPLK
CKLTLKQIKRVLFS
Run BLAST on NCBI

transcript from alignment at sc0003763:6281..9788+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042899 ID=TCONS_00042899|Name=TCONS_00042899|organism=Clytia hemisphaerica|type=transcript|length=3508bp|location=Sequence derived from alignment at sc0003763:6281..9788+ (Clytia hemisphaerica)
TTAGAATAGCCCAACAATCACCATCGAATTCAGTGTCACCTTTGGTTTCA
CCCAAACGACTCAATAAACCGAACGGAAAAGGTACTGGTCACAACATCCA
TCGTTTTTGTTTaagatttcatgtttttttttgtaagcatacaaaatttc
gaaaacagactcggagatgcttaggtcgagggcttgacaaggctgaaaaa
tgcgCATAAGGGTGCTTATATCCCAAGCAAAATAGTAGGGAAATTCCGAA
AGTCCGTAAAATCCCAACCAAGataaggaaaataatttttttgtaggctc
aaggtaatgtttagcatatgcttaaatttttgccatatctgATCCTAAAT
ATGCTTGTAAGTGCAATGCCTTTAATAAATATGTATTGTACTTACGGAAC
AATACTAAAGgaacaactttttcaaattagTTGTACATCAGCACTACccg
attttttgtcattttggcgcGTTTGATTGTTGTCTGAACTTTTGAATAAA
ACTGTTTTTGAAGTTCTTTCGGGAATATTTATAACAAATTTAGAAATTGG
GCTAATCATGGTCCTTAAATTCCAAATTCAATTCGACACAAGATTTTCGA
CGAGAGCTTCCCGATAGCGATAATAAATTGATAAATCTCAATAAGGCACA
ATTGGTGCATATGTTTTTTTTGAATAAGGTCCCNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNTTTCTTTGGTTTTGTCTACAGGTCGAGAC
CTACTTCATTTGAGAAGAGCTGATGGGAAGACACCACTTGATATTTGCCA
AGAACCGTCGGCGATGAAaaccttgttgaaaagatatgagAATGTGGAGT
CATCTTCTGACTATACTAACGTCTCCATTGTTGCAAATCAACAGGTTGCT
GTGAGTAGCATAAATAAAGATATGTACCAGAGTTTCGTTTCACCTGAACC
TCAGAATATGGAATTCTTTTTACAAATACTTTTGCAACTTATTACCAATT
ACCGGGACTCGAACATAGACGGCTTAAGATGCAATTCGAGCCAACTTGAA
GCCCAATACAATGATTTATTGATGCATGTCAAATTACTGAATGGGGATAA
GATACCCCTCAAATGCAAACTGACTTTGAAACAAATTAAACGCGTTTTGT
TTAGCTAAGAGAGAAGTATTACATATGATTTTATTACTGAAGGGTTTTAT
TCATTCATATTTCAGAGGTCAATACGGGGATTTGTTAACAGCAATTTGAC
GATTATTGTAATGCTCGTctcttttagttttttaaagagGAGTCTTCACT
CTTTTATGTGTCGGTCATATCGACCTACAGTTTATGAAATTAGAAGCTAC
AACCCCAAGACTATGGAGTCGATTCAATACTATGTAGTCAGATTACTCTG
ACCTCTTTTTACCCAACCCAAGGCAAACTTTACCGTTATAATGGTAGGTA
TTCATTCT

Coding sequence (CDS) from alignment at sc0003763:6281..9788+

>TCONS_00042899 ID=TCONS_00042899|Name=TCONS_00042899|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at sc0003763:6281..9788+ (Clytia hemisphaerica)
AGAATAGCCCAACAATCACCATCGAATTCAGTGTCACCTTTGGTTTCACC
CAAACGACTCAATAAACCGAACGGAAAAGGTCGAGACCTACTTCATTTGA
GAAGAGCTGATGGGAAGACACCACTTGATATTTGCCAAGAACCGTCGGCG
ATGAAaaccttgttgaaaagatatgagAATGTGGAGTCATCTTCTGACTA
TACTAACGTCTCCATTGTTGCAAATCAACAGGTTGCTGTGAGTAGCATAA
ATAAAGATATGTACCAGAGTTTCGTTTCACCTGAACCTCAGAATATGGAA
TTCTTTTTACAAATACTTTTGCAACTTATTACCAATTACCGGGACTCGAA
CATAGACGGCTTAAGATGCAATTCGAGCCAACTTGAAGCCCAATACAATG
ATTTATTGATGCATGTCAAATTACTGAATGGGGATAAGATACCCCTCAAA
TGCAAACTGACTTTGAAACAAATTAAACGCGTTTTGTTTAGCTAAAGAAT
AGCCCAACAATCACCATCGAATTCAGTGTCACCTTTGGTTTCACCCAAAC
GACTCAATAAACCGAACGGAAAAGGTCGAGACCTACTTCATTTGAGAAGA
GCTGATGGGAAGACACCACTTGATATTTGCCAAGAACCGTCGGCGATGAA
aaccttgttgaaaagatatgagAATGTGGAGTCATCTTCTGACTATACTA
ACGTCTCCATTGTTGCAAATCAACAGGTTGCTGTGAGTAGCATAAATAAA
GATATGTACCAGAGTTTCGTTTCACCTGAACCTCAGAATATGGAATTCTT
TTTACAAATACTTTTGCAACTTATTACCAATTACCGGGACTCGAACATAG
ACGGCTTAAGATGCAATTCGAGCCAACTTGAAGCCCAATACAATGATTTA
TTGATGCATGTCAAATTACTGAATGGGGATAAGATACCCCTCAAATGCAA
ACTGACTTTGAAACAAATTAAACGCGTTTTGTTTAGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026669XLOC_026669Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042899-proteinTCONS_00042899-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042899-exon-sc0003763-1491911889:6281..6361TCONS_00042899-exon-sc0003763-1491911889:6281..6361Clytia hemisphaericaexon
TCONS_00042899-exon-sc0003763-1510915933:6281..6361TCONS_00042899-exon-sc0003763-1510915933:6281..6361Clytia hemisphaericaexon
TCONS_00042899-exon-sc0003763-1575043694:6281..6361TCONS_00042899-exon-sc0003763-1575043694:6281..6361Clytia hemisphaericaexon
TCONS_00042899-exon-sc0003763-1491911889:9073..9788TCONS_00042899-exon-sc0003763-1491911889:9073..9788Clytia hemisphaericaexon
TCONS_00042899-exon-sc0003763-1510915933:9073..9788TCONS_00042899-exon-sc0003763-1510915933:9073..9788Clytia hemisphaericaexon
TCONS_00042899-exon-sc0003763-1575043694:9073..9788TCONS_00042899-exon-sc0003763-1575043694:9073..9788Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003763supercontigsc0003763:6281..9788 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.8702	8.32997	2.42471	2.2356	14.0703	11.5524	10.6168	11.425	6.45891	7.36481	8.69972	7.15426	6.34558	8.93752	6.49558	6.00096	6.39896	7.9224	3.86312	4.35422	9.99733	10.4925	15.5795	20.5351	9.94841	10.7718	4.33213	4.89786	9.69619	10.8623
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042899 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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