TCONS_00042940 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042940
Unique NameTCONS_00042940
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length297

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042940 ID=TCONS_00042940|Name=TCONS_00042940|organism=Clytia hemisphaerica|type=transcript|length=297bp
TCAAAAGAATCAGCTTCGCTTTCTGATCACGAATCTTGGTCTCAACaaca
ctttcaaaacaagacaTGAAAAAGTGAAACTCCAAGGGATtaccatcaaa
aacatcaagCGAAACTTCAGGAGCACTCTGCGAATCCAATAAATCACACA
ATCTATCAGCAGAATCTTCAGAAATGACAATAGGTTTTGATGAAGAAGTT
TTAGAGGCTTTAGGTTGAAACACAACATTTGGCTTAGAATTTGACTCAGG
CAAAACAACATCTTTGACAAAAGGAGTAGAAACTTTATAATCAGACA
Run BLAST on NCBI

transcript from alignment at sc0003796:3585..3881

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042940 ID=TCONS_00042940|Name=TCONS_00042940|organism=Clytia hemisphaerica|type=transcript|length=297bp|location=Sequence derived from alignment at sc0003796:3585..3881 (Clytia hemisphaerica)
TGTCTGATTATAAAGTTTCTACTCCTTTTGTCAAAGATGTTGTTTTGCCT
GAGTCAAATTCTAAGCCAAATGTTGTGTTTCAACCTAAAGCCTCTAAAAC
TTCTTCATCAAAACCTATTGTCATTTCTGAAGATTCTGCTGATAGATTGT
GTGATTTATTGGATTCGCAGAGTGCTCCTGAAGTTTCGcttgatgttttt
gatggtaATCCCTTGGAGTTTCACTTTTTCAtgtcttgttttgaaagtgt
tGTTGAGACCAAGATTCGTGATCAGAAAGCGAAGCTGATTCTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026706XLOC_026706Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042940-exon-sc0003796-1491911889:3585..3881TCONS_00042940-exon-sc0003796-1491911889:3585..3881Clytia hemisphaericaexon
TCONS_00042940-exon-sc0003796-1510915933:3585..3881TCONS_00042940-exon-sc0003796-1510915933:3585..3881Clytia hemisphaericaexon
TCONS_00042940-exon-sc0003796-1575043694:3585..3881TCONS_00042940-exon-sc0003796-1575043694:3585..3881Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003796supercontigsc0003796:3585..3881 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.7062	19.5993	3.18898	1.2598	1.62788	0.857584	0.517319	1.93723	0.339075	0	1.91565	0.535962	0.802825	1.66748	0.456966	0.245197	0	0.61921	0.855472	0	0.389041	1.70785	5.14569	4.72473	0	0.815901	0	0	1.5909	1.88242
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042940 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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