TCONS_00042942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042942
Unique NameTCONS_00042942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042942 ID=TCONS_00042942|Name=TCONS_00042942|organism=Clytia hemisphaerica|type=transcript|length=369bp
CATTAAGATTATTCTCACAATGTTGCATTGTCTGTAGGTGAAAATCTGTA
CGGTTGAGATTTTTCACTTACCTTaagtgtatatattttcgctgGCACTA
AATTTTAGCTAATCGCAAAAAGGTGATTGCAACAATGACTCAAATTTCAC
TGTCTACTTAAAATTTTGTTCAGGTGTCAAGTTTTCAAAAGTATGTTCGA
GAACCCTCTAGATGTGGATGAGCCATTGGTTCTGTCAGATGTTTCTCCTG
AAATCTTCTCAATTTTGCTGCAATATATCTATACCAATAAATGCAGTATA
AACACAGACAATGTGATGCCTTTGCTATCAATGGCAATGGAATATGGCAT
GGAACAACTTATTAAGGTT
Run BLAST on NCBI

transcript from alignment at sc0003799:539..1108+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042942 ID=TCONS_00042942|Name=TCONS_00042942|organism=Clytia hemisphaerica|type=transcript|length=570bp|location=Sequence derived from alignment at sc0003799:539..1108+ (Clytia hemisphaerica)
CATTAAGATTATTCTCACAATGTTGCATTGTCTGTAGGTGAAAATCTGTA
CGGTTGAGATTTTTCACTTACCTTaagtgtatatattttcgctgGCACTA
AATTTTAGCTAATCGCAAAAAGGTGATTGCAACAATGACTCAAATTTCAC
TGTCTACTTAAAATTTTGTTCAGGTGTCAAGTTTTCAAAAGTATGTTCGA
GAACCCTCTAGATGTGGATGAGCCATTGGTTCTGTCAGATGTTTCTCCTG
AAATCTTCTCAATTTTGCTGCAATATATCTATACCAATAAATGCAGTATA
AACACAGACAATGTAAATATTGTTAAAGTTTAACAATTCTTATTGACCAA
CCAAAGTAAAAATTAGCCTTTTTAGTTAGACGAAGCTTGTTTTTGCTATC
CATTACCTTACCCCTGTTAATTTCAGTGTTGTTATTACTATGGATTGTGT
AAGTTCGAGACTTACTACCCAAGTTTACTTTATAAAAGCCAGAACTGTAC
ACTCTTTTTCCAGGTGATGCCTTTGCTATCAATGGCAATGGAATATGGCA
TGGAACAACTTATTAAGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026708XLOC_026708Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042942-exon-sc0003799-1491911889:539..850TCONS_00042942-exon-sc0003799-1491911889:539..850Clytia hemisphaericaexon
TCONS_00042942-exon-sc0003799-1510915933:539..850TCONS_00042942-exon-sc0003799-1510915933:539..850Clytia hemisphaericaexon
TCONS_00042942-exon-sc0003799-1575043694:539..850TCONS_00042942-exon-sc0003799-1575043694:539..850Clytia hemisphaericaexon
TCONS_00042942-exon-sc0003799-1491911889:1052..1108TCONS_00042942-exon-sc0003799-1491911889:1052..1108Clytia hemisphaericaexon
TCONS_00042942-exon-sc0003799-1510915933:1052..1108TCONS_00042942-exon-sc0003799-1510915933:1052..1108Clytia hemisphaericaexon
TCONS_00042942-exon-sc0003799-1575043694:1052..1108TCONS_00042942-exon-sc0003799-1575043694:1052..1108Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003799supercontigsc0003799:539..1108 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.665208	0.648682	2.00849	2.94748	1.79414	1.89034	1.71046	1.06754	0	0.462894	0	0	0.14747	0.153149	0	0	0	0	0	0	0	0	0.508476	0	1.66648	0.42494	0.304044	0.324484	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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