TCONS_00042964 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042964
Unique NameTCONS_00042964
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length745

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042964 ID=TCONS_00042964|Name=TCONS_00042964|organism=Clytia hemisphaerica|type=transcript|length=745bp
CGACCTGATGACTGCTAGTTTTTCAACATCAACTCCGATCACAAAAATCG
CCTCCCAAATCAATATAATGTCTTCActtcaagaatattttgaattcaCT
TGTGTGCTGGGGTGCGGTATCAAAGGAGTGGAGATGACTGGCAATAAAGA
GGACTGGAAATCCCTTATAACAAAAATTGACAAACTTACGGAATTGCTAA
GCCCACTAGAAGACGTCTTGAAGCTTTCAGGTTGGTTGAAAGTTGTTCGT
GGTGTGTATGAGAAGCTACTGGTAACTTTCGAAGGAACGCCAGACAAGAA
TTGGTGGAGCAAAATCATTTCCAAAGTTCCATTTGGATCAGGTAGTCAAA
AGCAATATGAAGGTTGGATCGTACAGTTTCTAGAAGGTAAACCCAGTGTC
CAAACATTATCAGCTATGCAAAGTTCCATAACAAGCGTACCGATGAAAAT
AACGTACGACCAAAATTGTGAAGGAGAACAAAGTGCTCTTGTTGCAGGAC
CAGTTGGATTTACAATCGAAGAAGGAAATGAAGATTCGAAAAATGTTCCA
ACAATTCGACCGTACATTGGATGGGCTTTGTTGTTACCAAAGAATTCAGG
ATTTAGATGAAACTAACTGAATTAATTAGCTTGACAGTTTTTGAGCTAAC
ACTCACATACAGAACTTTATTGGAAAACCTATTTTAGTGAGGCAAAGTGT
AACCTTTTTATGATAACTCCAAATACAATATCTCCATTAAACCTN
Run BLAST on NCBI

transcript from alignment at sc0003817:2..8011+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042964 ID=TCONS_00042964|Name=TCONS_00042964|organism=Clytia hemisphaerica|type=transcript|length=8010bp|location=Sequence derived from alignment at sc0003817:2..8011+ (Clytia hemisphaerica)
CGACCTGATGACTGCTAGTTTTTCAACATCAACTCCGATCACAAAAATCG
CCTCCCAAATCAATATAATGTCTTCActtcaagaatattttgaattcaCT
TGTGTGCTGGGGTGCGGTATCAAAGGAGTGGAGATGACTGGCAATAAAGA
GGACTGGAAATCCCTTATAACAAAAATTGACAAACTTACGGAATTGCTAA
GCCCACTAGAAGACGTCTTGAAGCTTTCAGGTTGGTTGAAAGTTGTTCGT
GGTGTGTATGAGAAGCTACTGGTAACTTTCGAAGGAACGCCAGACAAGAA
TTGGTGGAGCAAAATCATTTCCAAAGTTCCATTTGGATCAGGTAGTCAAA
AGCAATATGAAGGTTGGATCGTACAGTTTCTAGAAGGTAAGACAGAACAA
AAGGAGGGAAGATAAGATGTATAGATCCCCTTTTGGGATTTTGCTGGCCA
GAGTATCAGGTGTGATACAAAAGCCTCTGTTTAACCTTGGTTAATGGCTC
TAATGTGATNTACAGAAGAAAAGGAGGGAAGATAAGATGTATGTATCCCC
TTTTGGGATTTTGCTGGCCAGAGTATCAGGCGTGATACAAAAGCCTCTGT
TTAACCTTGGTTAATGGCTCTAATGTGATATATTAACTCTTATACATTTC
ATTTAGATGAGGCACAGGATTTTATTTGTACATCTTTCTTTGCAGGTAAA
CCCAGTGTCCAAACATTATCAGCTATGCAAAGTTCCATAACAAGCGTACC
GATGAAAATAACGTACGACCAAAATTGTGAAGGAGAACAAAGTGCTATTG
TTGCAGGTAAGTTTAGGAACAATGGCAGCCTAAATATGTATATCTGTAGA
GTTAAGTGAATTTTCGCCATGTTAAGTTGTATGATAACTGATGATGGCGC
aagccgaaaagctttttatccaattttcaaatatattttatatttcacaA
ATTATATCTGTAGACATTTTGATGTTTCTGGTTTAGCGTCTAAATCTTCC
TAAAGCGATTTGCATTCCATTATAAGAAGGCAGCACATGTATAATTTGAA
TCTACTAACCCCGGGTTTACAAGAATGGCGAAGCTGTAAAAATACAACGT
TCGAATTAACTCCaataaatttttaggtttttcATATGTTAGTTCGTCAA
AATAGCAAATTACAGATTGGATATCCGGTGTAGAGCAGTGGATATCAAAG
TCTCACTCGATAAATTGCTGTTCGTAAATTTTGAAGCAAGATTTTCTCAG
TATTAAATTAcgttattttgttattttgactGATTCTAATATTGTTTTAA
TCAGTTTTGGAATTTCGTGCAAACGAACTTCGATCGAAGGACGGATCTTA
AAAATAATTTCCGCGGAAACTGAGCTTACATATCGGGCTAATGAAAAACT
TGATAGAGTttaacaaaagatttttgttaATATTATATTATTTAAATATT
ATCCAGCTTTCGATACAATAGGCCTCAGAAAACCCTTTTTGCTACCAACT
ACCCAAAGAAGTAATTCTGGCCAATATGTCCCTTAATCGCGGGATAAGTT
GATGATAGAATTTTcttgaagaaaatataaaaagtgTTAATCTATTTCCA
GGACCAGTTGGATTTACAATCGAAGAAGGGAATAAAGATTCGAAAAATGT
TCCAACAATTCGACCGTACATTGGATGGGCTTTGTTGCTACCAAAGAATT
CAGGATTTAGATGAAACTAACTGAATTAATTAGCTTGACATTTTCTGCGA
ATAAAACCCTCTTTTTCTGTTGACAATTCGTTCAAATTTATTCTTTCTTC
GCTTAACTGAGCCACAATGCCTCAATTACTTCAGAAAAGCCCATCTTAAA
ATGCTTCATATTGGGTTTTAGAATGAAAGTTAATTGAATTTGAGAAACTT
AGGTAAGCCCGGAGCGAAGTGAACAGTGTGTTTAAATTTGCTCGAAAATT
TACGATATTTTCCGTTTACCGTCAATAATGGTTAAGCTCCGCGTATATAT
TTCCCCGTGTTTACGATGGCATTTTCTAGTTATTACTAATTATGTTTTTA
AGTATTCAATATCTAAATtcttttgtaaacataaattttaTATTGATATC
CAAATAACCATCGGACTTTCTTTTCGAAAACTTATGCACTCTTCATCGTT
TTTCTAGATTTGAGCACATTAAAGCCtaaaattcacaaaagaaaATCAGC
CTAGCCTTATTTACAATTTACTTTTTCTCATAAAAAGACGTGCTTACCCT
ATGCTTAAAGGTAGAGAGGCTAAAATTGTGGATAAATTAAGGAAGTGTTA
GTGTACGAGTGCAGGATGGAAATTGAGAGATGATATCTTCAAGGGTATTC
TGAGCACGTGGTCACATTCCACAGGCACGTGGTCTACTATTTCTCCTCGC
GTAATTATAGAAAGAAAGATAATGTTCCACGGTTTGCACACATGTTTCAC
TTCCTTGATAAGGCTACGTCACTCCTTCCTTCGTTTTGAGCGTGAAAaac
taaaagcctggagctgccTATTACTGCTAGACTGTTTTCTTGGTAATTCG
TATGAACAATATCTCCGAGCAGATTGTATCAGAGAATCCCGTTTACATCG
CACCTCTATTTATTTTTGACGGTATTTGATCACttgacggtgtgacggta
tCTATAAACCAgtctcttttcaaaatttagattgATTACCGTTTTCATAG
CACAAAACGTTTTTCTCTATTCTCAAGAAATCAAAGTATCTTGAAATGGA
TCTactttgtgaaaattttaacgGCATGAAGAGATAAAAGTTAATTGAcg
ttaaaaaatataaaatgcaGAATCATTGCTTTCTCAATGCTTTTATTTAC
GCAAAAGATAAATATCTATCTCCATGCGTTTTCTCTAATGATGTGTTATT
CATTTCATTTTGACATACTTCTAGGAAAATCTTCCAATCCGTTATAATTA
TCCAACCAAATTATAACACCAATTATATTTTAATTGGATAACAGCACGAA
GCGAAACTTATTCTTTATTGCCACGttttaatatattttctttctccacg
ttttctttttttggcaTATCCACCCTCTATTGTTTCTGAGTTTCTAACCA
TGGGTATAAAAGGAATGATGTTTCAATTGAAAAtatcatcaaacaacaaa
cagTTGATTTGAAGAGTAAAAAAACAGAACAGAAGATAATCATTTGGCTg
tttttataaatcaaaaaacaaagaagagAATTTTAACAGAATTTCAGATA
actaatttaaaaagttttattttcaataaaaggtGTCTACTGAAAATCTT
GTATCGAATCATGCAATTaacacaaaacaaaagcaaTAATATTCTATAAA
ACTTTAATTTACTGTGGTGTTAAAGATAAGAGTTAAGTATTGAGAGAATT
TATTAAtgagaaattttgatttagTGGAAATATATTAATCATATTTTCTA
ACCTTGAATGAACCTTCTAAAGAATGAAGTTACACCATTTATCATTAGTT
TTGGTATTCGGTTGTTTATTACAAGTTGAATCACAAAgtaagaatttaca
aaaaattcattattttgtcCAAGTAATGTCCATATATCTACTCAACAGGA
atttatttttacatcaaaaaaatcaatacaAGAATTGATATATTTGCATT
TTGTTCTCTTCTaggcccccccccagcggtttgcgtgaatgcgtgaatgc
gtgaatgggcattttcacttgcgtgattgcgtgaaaattgaaaaataatt
gcgtgaatgcgtgaattgaaaaaacttgcgtgaacgtgaaaatccacttt
ttgattgcgtgaatacgtgaatctgggctattttgtgcgtgaatacgtga
atttccCCTTATTTCCACCAATAATGGGTacttttcccgattttccaatg
tttccccgatttttcccaaaaatttcccgattttctgaaaaatcggatta
ttgcgtgaaactcgaggaaaatttgcgtgaatgcgtgaattttgaaaaaa
aattgcgtgattgcgtgaattgagggtccactgggggggcctcttttaTG
ATTTGGTTTTAAGGAAAGATACAAAATTTGTTATTTATGATATTAAAGCT
TTTGTATCTATAAATTAATCATGGTAGTTATTTGAGACAACACAATCTGG
TCAAAAGTAGACTCGAACCAAAGACAACCGTAACCATACCTCGACCTTAT
TATTCACGCTAACGCtttgcatgttttttttatgagaacatttatgacaa
aaattttgaagcctacAGAAGTacttaacttttcgagttgttgttttcac
caatttttgagtatttttgtccattttcctaagaaattggatgttCCAGG
GTCTACAgaagtgttcttaacttgctcttaacaaTTTGgtcctcgaagcc
ttatgttcttataaaaaaacgcgttCTCATCATAAATAAATGCTGCCATC
GGCTGTTTCTTAAAATAGAAATTCCCCTTCCAATGCTGATGATGCAATGA
TAACATTATAGAAAAGATTTTCAGCGTCTTTGAAGATAAAAATGTGATAA
CGTAGTAAGTACTTTTGAAATGTAATGGAAGCTAGACTTTCTAAGCAACC
GAATATAAATACTTTAAAGAAATAGAGTGCTGCTTGCGTTGAAACTATTG
CATTTTTTTGATAAGTAAAAACAAGATCCGTGTGCCATGAGAATCACACT
TTAGTCTTTCTttgaaatataagaaaaattcGTCTAAAATGACTTCTATT
TAAATTCTTAAAAGAcaatatatattttatacatTTCATGCACTTTGATA
CTCACATTACCTACATGGAATGTATTGCCACGATTTGTCGTCGAGTCGAC
CTCCATTCACTTGTTTAAACAAAACCTTAATGAAGCGTGGAAAAGACACA
AACTTAGATATTTAACAAATTAGAATTGTAATCAAACCGTTTCGTAGAGG
CCCACCTCAGGCCTGTGAACTTGTAtactgtataataataataattacca
TCAGCGGGCAAACGCACCCGGCCTACTACGGTACATGGTTGTGGGTAAGT
AGAGAAATCGAGGGAAAAGAACGGCTTCCTTATCATCAAGAAGATTTAGG
AAAAGGAAAACGTCAGGTCACCGTCAGGTTGACGGCGGTTGGAAGCTTAC
AAATTTACTGTAACTTTTATCTTTATAGAAANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAT
CCCTTATAACAAAAATTGACAAACTTACGGAATTGCTAAGCCCACTAGAA
GACGTCTTGAAGCTTTCAGGTTGGTTGAAAGTTGTTCGTGGTGTGTATGA
GAAGCTACTGGTAACTTTCGAAGGAACGCCAGACAAGAATTGGTGGAGCA
AAATCATTTCCAAAGTTCCATTTGGATCAGGTAGTCAAAAGCAATATGAA
GGTTGGATCGTACAGTTTCTAGAAGGTAAGACAGAACAAAAGGAGTGAAG
ATAAGATGTATGTATCCCCTTTTGGGATTTTGCTGGCCAGAGTATCAGGC
GTGATACAAAAGCCTCTGTTTAACCTTGGTTAATGGCTCTAATGTGATAT
ATTAACTCTTATACATTTCATTTAGATGAGGCACAGGATTTTATTTGTAC
ATCTTTCTTTGCAGGTAAACCCAGTGTCCAAACATTATCAGCTATGCAAA
GTTCCATAACAAGCGTACCGATGAAAATAACGTACGACCAAAATTGTGAA
GGAGAACAAAGTGCTCTTGTTGCAGGTAAGTTTAGGAACAATGGCAGCCT
AAATATGTATATCTGTAGAGTTAAGTGAATTTTCGCCATGTTAAGTTGTA
TGATAACTGATGATGGCGCaagccgaaaagctttttatccaattttcaaa
tatattttatatttcacaAATTATATCTGTAGACATTTTGATGTTTCTGG
TTTAGCGTCTAAATCTTCCTAAAGCGATTTGCATTCCATTATAAGAAGGC
AGCACATGTATAATTTGAATCTACTAACCCCGGGTTTACAAGAATGGCGA
AGCTGTAAAAATACAACGTTCGAATTAACTCCaataaatttttaggtttt
tcATATGTTAGTTCGTCAAAATAGCAAATTACAGATTGGATATCCGGTGT
AGAGCAGTGGATATCAAAGTCTCACTCGATAAATTGCTGTTCGTAAATTT
TGAAGCAAGATTTTCTCAGTATTAAATTAcgttattttgttattttgact
GATTCTAATATTGTTTTAATCAGTTTTGGAATTTCGTGCAAACGAACTTC
GATCGAAGGACGGATCTTAAAAATAATTTCCGCGGAAACTGAGCTTACAT
ATCGGGCTAATGAAAAACTTGATAGAGTttaacaaaagatttttgttaAT
ATTATATTATTTAAATATTATCCAGCTTTCGATACAATAGGCCTCAGAAA
ACCCTTTTTGCTACCAGCTACCCAAAGAAGTAATTCTGGCCAATATGTCC
CTTAATCGCGGGATAAGTTGATGATAGAATTTTcttgaagaaaatataaa
aagtgTTTCCAGGACCAGTTGGATTTACAATCGAAGAAGGAAATGAAGAT
TCGAAAAATGTTCCAACAATTCGACCGTACATTGGATGGGCTTTGTTGTT
ACCAAAGAATTCAGGATTTAGATGAAACTAACTGAATTAATTAGCTTGAC
AGTTTTTGAGCTAACACTCACATACAGAACTTTATTGGAAAACCTATTTT
AGTGAGGCAAAGTGTAACCTTTTTATGATAACTCCAAATACAATATCTCC
ATTAAACCTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026726XLOC_026726Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042964-exon-sc0003817-1491911889:2..387TCONS_00042964-exon-sc0003817-1491911889:2..387Clytia hemisphaericaexon
TCONS_00042964-exon-sc0003817-1510915933:2..387TCONS_00042964-exon-sc0003817-1510915933:2..387Clytia hemisphaericaexon
TCONS_00042964-exon-sc0003817-1575043694:2..387TCONS_00042964-exon-sc0003817-1575043694:2..387Clytia hemisphaericaexon
TCONS_00042964-exon-sc0003817-1491911889:6866..6976TCONS_00042964-exon-sc0003817-1491911889:6866..6976Clytia hemisphaericaexon
TCONS_00042964-exon-sc0003817-1510915933:6866..6976TCONS_00042964-exon-sc0003817-1510915933:6866..6976Clytia hemisphaericaexon
TCONS_00042964-exon-sc0003817-1575043694:6866..6976TCONS_00042964-exon-sc0003817-1575043694:6866..6976Clytia hemisphaericaexon
TCONS_00042964-exon-sc0003817-1491911889:7764..8011TCONS_00042964-exon-sc0003817-1491911889:7764..8011Clytia hemisphaericaexon
TCONS_00042964-exon-sc0003817-1510915933:7764..8011TCONS_00042964-exon-sc0003817-1510915933:7764..8011Clytia hemisphaericaexon
TCONS_00042964-exon-sc0003817-1575043694:7764..8011TCONS_00042964-exon-sc0003817-1575043694:7764..8011Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003817supercontigsc0003817:2..8011 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.52806e-06	0.332818	0	0.265806	0	0	5.73986e-09	0.0290762	3.98954	0.624124	8.04387	2.36427	1.70155	5.14307	1.09181	4.31715	0.000286623	4.02634	4.74509	2.72761	5.37661e-06	1.38926	0	0	2.48986	2.94909	1.18285	2.37725	4.92436e-06	0.00544782
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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