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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042986 ID=TCONS_00042986|Name=TCONS_00042986|organism=Clytia hemisphaerica|type=transcript|length=1242bp
ATCTCAGCATCAAGAATGCAACATTCATCTTCCAACATATTGAAGAATTT
TAGGTCACTTCCTGCATTTCGGAAATCTTGAAGATCATTTTTCATTTGCT
CCAAAGTTCGTGGCTGACAAGAACGCTGATCTGGAGGaagttgaatttct
ttttttgttgcaaTGCAAAATAAACATGGATGTCGTCCTGAAGAGAGAAA
TGGGTCCTAATAATAATCTGCTGACTGCATtaaggtaaaaaaatttttct
cttccAAAGAATTTTAACACCTGCAACTTACCACTTGCTCCTGTAATACC
ATAGATTTTGCACAAGTATTCGTAGTCACCGCACATAAACACTCTGATGC
AACGATCCCTGGATTAAAAAAAGTTACTATTAAGTACTTTTGTTTGGACA
AGTAGCTTAAGTGTTTATCGATTGGCTGTCCTTGCTAATTTGAAATCATT
CAGGTATTTTTGGGCATATGCTACATCATTAGACCCCTCTCCCTAATCAC
ACACACACATGCAGAACTGTTGTCAATTAATTTTACTTTGGTATTAATCA
AACAATTTTACCCAATCTTTGCCATGTTCAAACTATTGACATCCTTTGAC
AATTGCATTGTGGCTATTTCAAGATTGCTTCTGATGTCCTTTGCCTCAAA
GGTGTTCATGACAATTGTCTTGTTTATGCTGTTAGGCTTTGGTAGATTTG
CGATTTGGTATGCAAACTTGAAAGAAGCACCACCATGGTCACCTCCAACT
TTGAGATGAATTTCTTGTTCCATTGGCTCTGTATggtttttcaacatttt
ggccctgaaaaaataaaagtgtttaattttaagcattttgttttaatttt
tagcattttgttttaattttagcattttgtttTCGTTTTAGATCTACCTT
GCTATTATGGGACTGGAATTACCAACACCCCGTTAAACTCACCTGATGAT
AGAGTCTAAACGACCAAGCAAATGCTCCttgaaattttccataaatGCCC
AGCCAGAAGAACCCACGATGAACTTTCCTTTCTCTTCTTGACATGGAAAG
GTGAATGGTGCCAAGATTCCTTTGACAACAGCATTCTCGATTCGTTTCAT
CGTCTGACGTTGCTTTGCTTCGCTTTCTGGTTTGATGTTGAAACTTCTTA
GCCAGCTGTAAATGTGTAATATATACAGATACTTGTgataatttattcaa
aatttttattgtatACCATTGTATCGATCCAATATTAAATTN Run BLAST on NCBI transcript from alignment at sc0003833:4742..6403+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042986 ID=TCONS_00042986|Name=TCONS_00042986|organism=Clytia hemisphaerica|type=transcript|length=1662bp|location=Sequence derived from alignment at sc0003833:4742..6403+ (Clytia hemisphaerica)
ATCTCAGCATCAAGAATGCAACATTCATCTTCCAACATATTGAAGAATTT
TAGGTAAGATCCTAACGAGATGTGCAAACCAGGTATTGCAATCtaagata
aaaataattttaattacCTACTTAAAtattacacttatataactaCTCAT
GTTATTAACGTGAATTGGTCAACCTTGCGTTGATTATAACTGTTTAACAA
AATTTGAGCTAaggtaattttttgaaaacccTGCCTTTCGTGTTAATTAA
TTGTCACACTCATTTTTCCTGCATTGAATACTTGATTAGTTATATAAGTG
TTAAGGTAGTAAACTGTAATCGAATTTTCTTAACGCATTGTTAAAAGAGT
TTACCACTTTGACTCTTGGTGAGGAGATCTACCAAATCTATTTTTAATGA
TATTTACCTGGTCGATTGGGATCAAGAAAAGGGGATCGTCAATAACATTA
TTGAACTCCTTTGCTCTTTTCAGGTCACTTCCTGCATTTCGGAAATCTTG
AAGATCATTTTTCATTTGCTCCAAAGTTCGTGGCTGACAAGAACGCTGAT
CTGGAGGaagttgaatttctttttttgttgcaaTGCAAAATAAACATGGA
TGTCGTCCTGAAGAGAGAAATGGGTCCTAATAATAATCTGCTGACTGCAT
taaggtaaaaaaatttttctcttccAAAGAATTTTAACACCTGCAACTTA
CCACTTGCTCCTGTAATACCATAGATTTTGCACAAGTATTCGTAGTCACC
GCACATAAACACTCTGATGCAACGATCCCTGGATTAAAAAAAGTTACTAT
TAAGTACTTTTGTTTGGACAAGTAGCTTAAGTGTTTATCGATTGGCTGTC
CTTGCTAATTTGAAATCATTCAGGTATTTTTGGGCATATGCTACATCATT
AGACCCCTCTCCCTAATCACACACACACATGCAGAACTGTTGTCAATTAA
TTTTACTTTGGTATTAATCAAACAATTTTACCCAATCTTTGCCATGTTCA
AACTATTGACATCCTTTGACAATTGCATTGTGGCTATTTCAAGATTGCTT
CTGATGTCCTTTGCCTCAAAGGTGTTCATGACAATTGTCTTGTTTATGCT
GTTAGGCTTTGGTAGATTTGCGATTTGGTATGCAAACTTGAAAGAAGCAC
CACCATGGTCACCTCCAACTTTGAGATGAATTTCTTGTTCCATTGGCTCT
GTATggtttttcaacattttggccctgaaaaaataaaagtgtttaatttt
aagcattttgttttaatttttagcattttgttttaattttagcattttgt
ttTCGTTTTAGATCTACCTTGCTATTATGGGACTGGAATTACCAACACCC
CGTTAAACTCACCTGATGATAGAGTCTAAACGACCAAGCAAATGCTCCtt
gaaattttccataaatGCCCAGCCAGAAGAACCCACGATGAACTTTCCTT
TCTCTTCTTGACATGGAAAGGTGAATGGTGCCAAGATTCCTTTGACAACA
GCATTCTCGATTCGTTTCATCGTCTGACGTTGCTTTGCTTCGCTTTCTGG
TTTGATGTTGAAACTTCTTAGCCAGCTGTAAATGTGTAATATATACAGAT
ACTTGTgataatttattcaaaatttttattgtatACCATTGTATCGATCC
AATATTAAATTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042986-exon-sc0003833-1491911889:4742..4794 | TCONS_00042986-exon-sc0003833-1491911889:4742..4794 | Clytia hemisphaerica | exon |
| TCONS_00042986-exon-sc0003833-1510915933:4742..4794 | TCONS_00042986-exon-sc0003833-1510915933:4742..4794 | Clytia hemisphaerica | exon |
| TCONS_00042986-exon-sc0003833-1575043694:4742..4794 | TCONS_00042986-exon-sc0003833-1575043694:4742..4794 | Clytia hemisphaerica | exon |
| TCONS_00042986-exon-sc0003833-1491911889:5215..6403 | TCONS_00042986-exon-sc0003833-1491911889:5215..6403 | Clytia hemisphaerica | exon |
| TCONS_00042986-exon-sc0003833-1510915933:5215..6403 | TCONS_00042986-exon-sc0003833-1510915933:5215..6403 | Clytia hemisphaerica | exon |
| TCONS_00042986-exon-sc0003833-1575043694:5215..6403 | TCONS_00042986-exon-sc0003833-1575043694:5215..6403 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003833 | supercontig | sc0003833:4742..6403 + |
Blast
The following BLAST results are available for this feature:
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