TCONS_00042987 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00042987
Unique Name	TCONS_00042987
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2611

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0003833:5000..9011-

transcript sequence

>TCONS_00042987 ID=TCONS_00042987|Name=TCONS_00042987|organism=Clytia hemisphaerica|type=transcript|length=2611bp
TTCTTCCTGGAGGAGAGAAATTTCGACATAAACAACACTCCCCCCTTCAT
GTGCCTGACCTGTCATGCCaaattaaaaaacatgaaaagggCTTCTTCAA
CTGCAAAACTAATTTTGCCTAAATGGGGCCCTCACCAACAAGAAAACTGC
ATCTGTAACCGAAGATTTAATTCTACTGAAATAGTTCCCCAATCGAAAGC
AGGCCGAACGCCAAAGAAAACAAGGAAGAACAAGGGTAGACCATCCCATA
CTTCTACCTCTATTTGGTCAAGAGGAATGGCCAATGATGTACTTAGTTCT
GTGGACCAAACAAATTCCCCATCAATAAGCCCAGAACAATGTGAGATTTT
GGCTGAGCGAGTGGAAGAAGTCTTCCTGTGTCACCTTTGCAAACACATTA
TGGAAATTCCCATTTCTAACACAAAGTGCTTCCATTCCTTTTGCCACAAA
TGTATTTTCCCCAAGATTATTGGATTTACGCTAGATGAAACATTATGCCC
GATTTGCAAGGCTAATTTGCACCCACAAAATGTCCACGTTTCCCTCGCCC
TCCAGCACTCGTTGAAATCAACCAAAGTACCTTGTACTAAATGTCAGACT
CCTTTTGCATTATTGGAGATTTTGAATCATGAAAGCAAGTGTCAATCAGT
CATCAAAATTTCGGACGTATTTGAGCTCAAATGTTTCCCAAGACATGTGG
AGGATGCCGCCCTACATGttatcaaacaaaaaatggacTCAGATAAAACC
GTGAAATTTGCAAGTGGTGGTCCTAGAGTAAGGccttttttcttatcttt
ttacACAAAATAAAATAGTGTATAATATGTATGTATCTAACTACTAGATT
GATCAAATAGCGTTCTTTAAATGACTTTATATATAAGACCTTTCCTGCAA
TTATCTAATCACtcatctaaaaaaaattaagaaatgaaCATCAGTCACTT
GACCTGTCTCAaacgtttgcaaaaaattaattgataaaTGCCTCTTTCTC
ATAGCCTGTAACATTTACGAAGCTCACTCAAAATTACGTCCCTTCAGAGA
AGGCAAACAAGCGAACAGTGCAGAAAAGGAACAGAGAAATGATGGAAAAT
ATGAGTGTGGTTGCTGGGCCTTCCCAAAAGTCGATCAATTTCCAATCTGC
TAAACTTGTGAATTCGTTTACAGAGGCTGAACGCCAATCCATCTTAGAGC
ATGCTAACATTAGACCAGTCATAGAAGCAAGAAAGATGTTAGCAATGAGA
CTTCAATTTGGTTTATCATGGGGCATGTTACGTGGAGATTCAGGCTGGCT
AAGAAGTTTCAACATCAAACCAGAAAGCGAAGCAAAGCAACGTCAGACGA
TGAAACGAATCGAGAATGCTGTTGTCAAAGGAATCTTGGCACCATTCACC
TTTCCATGTCAAGAAGAGAAAGGAAAGTTCATCGTGGGTTCTTCTGGCTG
GGCatttatggaaaatttcaaGGAGCATTTGCTTGGTCGTTTAGACTCTA
TCATCAGGTGAGTTTAACGGGGTGTTGGTAATTCCAGTCCCATAATAGCA
AGGTAGATCTAAAACGAaaacaaaatgctaaaattaaaacaaaatgctaa
aaattaaaacaaaatgcttaaaattaaacacttttattttttcagggcca
aaatgttgaaaaaccATACAGAGCCAATGGAACAAGAAATTCATCTCAAA
GTTGGAGGTGACCATGGTGGTGCTTCTTTCAAGTTTGCATACCAAATCGC
AAATCTACCAAAGCCTAACAGCATAAACAAGACAATTGTCATGAACACCT
TTGAGGCAAAGGACATCAGAAGCAATCTTGAAATAGCCACAATGCAATTG
TCAAAGGATGTCAATAGTTTGAACATGGCAAAGATTGGGTAAAATTGTTT
GATTAATACCAAAGTAAAATTAATTGACAACAGTTCTGCATGTGTGTGTG
TGATTAGGGAGAGGGGTCTAATGATGTAGCATATGCCCAAAAATACCTGA
ATGATTTCAAATTAGCAAGGACAGCCAATCGATAAACACTTAAGCTACTT
GTCCAAACAAAAGTACTTAATAGTAACTTTTTTTAATCCAGGGATCGTTG
CATCAGAGTGTTTATGTGCGGTGACTACGAATACTTGTGCAAAATCTATG
GTATTACAGGAGCAAGTGGTAAGTTGCAGGTGTTAAAATTCTTTggaaga
gaaaaatttttttaccttaATGCAGTCAGCAGATTATTATTAGGACCCAT
TTCTCTCTTCAGGACGACATCCATGTTTATTTTGCAttgcaacaaaaaaa
gaaattcaacttCCTCCAGATCAGCGTTCTTGTCAGCCACGAACTTTGGA
GCAAATGAAAAATGATCTTCAAGATTTCCGAAATGCAGGAAGTGACCTGA
AAAGAGCAAAGGAGTTCAATAATGTTATTGACGATCCCCTTTTCTTGATC
CCAATCGACCAGGTAAATATCATTAAAAATAGATTTGGTAGATCTCCTCA
CCAAGAGTCAAAGTGGTAAACTCTTTTAACAATGCGTTAAGAAAATTCGA
TTACAGTTTACTACCTTAACACTTATATAACTAATCAAGTATTCAATGCA
GGAAAAATGAG

Run BLAST on NCBI

transcript from alignment at sc0003833:5000..9011-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00042987 ID=TCONS_00042987|Name=TCONS_00042987|organism=Clytia hemisphaerica|type=transcript|length=4012bp|location=Sequence derived from alignment at sc0003833:5000..9011- (Clytia hemisphaerica)
TTCTTCCTGGAGGAGAGAAATTTCGACATAAACAACACTCCCCCCTTCAT
GTGCCTGACCTGTCATGCCAAATTAAAAAACATGAAAAGGGCTTCTTCAA
CTGCAAAACTAATTTTGCCTAAATGGGGCCCTCACCAACAAGAAAACTGC
ATCTGTAACCGAAGATTTAATTCTACTGAAATAGTTCCCCAATCGAAAGC
AGGCCGAACGCCAAAGAAAACAAGGAAGAACAAGGGTAGACCATCCCATA
CTTCTACCTCTATTTGGTCAAGAGGAATGGCCAATGATGTACTTAGTTCT
GTGGACCAAACAAATTCCCCATCAATAAGCCCAGAACAATGTGAGATTTT
GGCTGAGCGAGTGGAAGAAGTCTTCCTGTGTCACCTTTGCAAACACATTA
TGGAAATTCCCATTTCTAACACAAAGTGCTTCCATTCCTTTTGCCACAAA
TGTATTTTCCCCAAGATTATTGGATTTACGCTAGATGAAACATTATGCCC
GATTTGCAAGGCTAATTTGCACCCACAAAATGTCCACGTTTCCCTCGCCC
TCCAGCACTCGTTGAAATCAACCAAAGTACCTTGTACTAAATGTCAGACT
CCTTTTGCATTATTGGAGATTTTGAATCATGAAAGCAAGTGTCAATCAGT
CATCAAAATTTCGGACGTATTTGAGCTCAAATGTTTCCCAAGACATGTGG
AGGATGCCGCCCTACATGTTATCAAACAAAAAATGGACTCAGATAAAACC
GTGAAATTTGCAAGTGGTGGTCCTAGAGTAAGGCCTTTTTTCTTATCTTT
TTACACAAAATAAAATAGTGTATAATATGTATGTATCTAACTACTAGATT
GATCAAATAGCGTTCTTTAAATGACTTTATATATAAGACCTTTCCTGCAA
TTATCTAATCACTCATCTAAAAAAAATTAAGAAATGAACATCAGTCACTT
GACCTGTCTCAAACGTTTGCAAAAAATTAATTGATAAATGCCTCTTTCTC
ATAGCCTGTAACATTTACGAAGCTCACTCAAAATTACGTCCCTTCAGAGA
AGGCAAACAAGCGAACAGTGCAGAAAAGGAACAGAGAAATGATGGAAAAT
ATGAGTGTGGTTGCTGGGCCTTCCCAAAAGTCGATCAATTTCCAATCTGC
TAAACTTGTGAATTCGTTTACAGAGGCTGAACGCCAATCCATCTTAGAGC
ATGCTAACATTAGACCAGTCATAGAAGCAAGAAAGATGTTAGCAATGAGA
CTTCAATTTGGTTTATCATGGGGCATGTTACGTGGAGATTCAGGGTGAGA
TAATCAAATTAAATCTAGTTCCATAAGCTGATTGCAGAGTGATATANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAATTTAATATTGGATCGATACAATGGTATACAATAAAAATT
TTGAATAAATTATCACAAGTATCTGTATATATTACACATTTACAGCTGGC
TAAGAAGTTTCAACATCAAACCAGAAAGCGAAGCAAAGCAACGTCAGACG
ATGAAACGAATCGAGAATGCTGTTGTCAAAGGAATCTTGGCACCATTCAC
CTTTCCATGTCAAGAAGAGAAAGGAAAGTTCATCGTGGGTTCTTCTGGCT
GGGCATTTATGGAAAATTTCAAGGAGCATTTGCTTGGTCGTTTAGACTCT
ATCATCAGGTGAGTTTAACGGGGTGTTGGTAATTCCAGTCCCATAATAGC
AAGGTAGATCTAAAACGAAAACAAAATGCTAAAATTAAAACAAAATGCTA
AAAATTAAAACAAAATGCTTAAAATTAAACACTTTTATTTTTTCAGGGCC
AAAATGTTGAAAAACCATACAGAGCCAATGGAACAAGAAATTCATCTCAA
AGTTGGAGGTGACCATGGTGGTGCTTCTTTCAAGTTTGCATACCAAATCG
CAAATCTACCAAAGCCTAACAGCATAAACAAGACAATTGTCATGAACACC
TTTGAGGCAAAGGACATCAGAAGCAATCTTGAAATAGCCACAATGCAATT
GTCAAAGGATGTCAATAGTTTGAACATGGCAAAGATTGGGTAAAATTGTT
TGATTAATACCAAAGTAAAATTAATTGACAACAGTTCTGCATGTGTGTGT
GTGATTAGGGAGAGGGGTCTAATGATGTAGCATATGCCCAAAAATACCTG
AATGATTTCAAATTAGCAAGGACAGCCAATCGATAAACACTTAAGCTACT
TGTCCAAACAAAAGTACTTAATAGTAACTTTTTTTAATCCAGGGATCGTT
GCATCAGAGTGTTTATGTGCGGTGACTACGAATACTTGTGCAAAATCTAT
GGTATTACAGGAGCAAGTGGTAAGTTGCAGGTGTTAAAATTCTTTGGAAG
AGAAAAATTTTTTTACCTTAATGCAGTCAGCAGATTATTATTAGGACCCA
TTTCTCTCTTCAGGACGACATCCATGTTTATTTTGCATTGCAACAAAAAA
AGAAATTCAACTTCCTCCAGATCAGCGTTCTTGTCAGCCACGAACTTTGG
AGCAAATGAAAAATGATCTTCAAGATTTCCGAAATGCAGGAAGTGACCTG
AAAAGAGCAAAGGAGTTCAATAATGTTATTGACGATCCCCTTTTCTTGAT
CCCAATCGACCAGGTAAATATCATTAAAAATAGATTTGGTAGATCTCCTC
ACCAAGAGTCAAAGTGGTAAACTCTTTTAACAATGCGTTAAGAAAATTCG
ATTACAGTTTACTACCTTAACACTTATATAACTAATCAAGTATTCAATGC
AGGAAAAATGAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_026740	XLOC_026740	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00042987-exon-sc0003833-1575043694:7718..9011	TCONS_00042987-exon-sc0003833-1575043694:7718..9011	Clytia hemisphaerica	exon
TCONS_00042987-exon-sc0003833-1575043694:5000..6316	TCONS_00042987-exon-sc0003833-1575043694:5000..6316	Clytia hemisphaerica	exon
TCONS_00042987-exon-sc0003833-1510915933:7718..9011	TCONS_00042987-exon-sc0003833-1510915933:7718..9011	Clytia hemisphaerica	exon
TCONS_00042987-exon-sc0003833-1510915933:5000..6316	TCONS_00042987-exon-sc0003833-1510915933:5000..6316	Clytia hemisphaerica	exon
TCONS_00042987-exon-sc0003833-1491911889:7718..9011	TCONS_00042987-exon-sc0003833-1491911889:7718..9011	Clytia hemisphaerica	exon
TCONS_00042987-exon-sc0003833-1491911889:5000..6316	TCONS_00042987-exon-sc0003833-1491911889:5000..6316	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0003833	supercontig	sc0003833:5000..9011 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.648957	0.525226	0.617842	0.723325	2.21058	1.62869	1.51113	1.23924	0.824451	1.11797	0.475027	0.786681	0.656595	0.600158	1.02421	1.14134	1.36462	1.02715	0.887841	0.768935	2.68064	2.9804	0.960269	0.901922	0.137018	0.120153	1.08104	0.457423	1.04082	0.491952

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00042987 vs. Swiss-Prot (Human)

BLAST of TCONS_00042987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00042987 (transcript) - C. hemisphaerica