TCONS_00042992 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042992
Unique NameTCONS_00042992
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042992 ID=TCONS_00042992|Name=TCONS_00042992|organism=Clytia hemisphaerica|type=transcript|length=280bp
GTTTATCATTTCTGTTATTTTCACTACGATATCTTAAGTACAATGAAATC
TGaacactttatttaaaaaaataaactatAGAAAATTGAAAGAACTGGAT
GCACTCAGAGTGTGATGATAGAAAaagatgtttcatttttcttttagctt
taGAACTTTCTGGCTCGCCTCCTTCGAGGAGCGAGGCGTCTGCGATTTGC
AGAAATTGTTCAGAAAGATGTTCGATAATATCATAGCATTATTTTTAGTG
ATAGAGTCAAAAGCGTACGTGTGAGCGATA
Run BLAST on NCBI

transcript from alignment at sc0003835:8003..8282

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042992 ID=TCONS_00042992|Name=TCONS_00042992|organism=Clytia hemisphaerica|type=transcript|length=280bp|location=Sequence derived from alignment at sc0003835:8003..8282 (Clytia hemisphaerica)
TATCGCTCACACGTACGCTTTTGACTCTATCACTAAAAATAATGCTATGA
TATTATCGAACATCTTTCTGAACAATTTCTGCAAATCGCAGACGCCTCGC
TCCTCGAAGGAGGCGAGCCAGAAAGTTCtaaagctaaaagaaaaatgaaa
catcttTTTCTATCATCACACTCTGAGTGCATCCAGTTCTTTCAATTTTC
TatagtttatttttttaaataaagtgttCAGATTTCATTGTACTTAAGAT
ATCGTAGTGAAAATAACAGAAATGATAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026743XLOC_026743Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042992-exon-sc0003835-1491911889:8003..8282TCONS_00042992-exon-sc0003835-1491911889:8003..8282Clytia hemisphaericaexon
TCONS_00042992-exon-sc0003835-1510915933:8003..8282TCONS_00042992-exon-sc0003835-1510915933:8003..8282Clytia hemisphaericaexon
TCONS_00042992-exon-sc0003835-1575043694:8003..8282TCONS_00042992-exon-sc0003835-1575043694:8003..8282Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003835supercontigsc0003835:8003..8282 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.261569	1.93252	1.66656	0	0	0	0.247666	0.763192	0	0	2.08512	2.14075	0	3.23288	0.373259	0.392563	0	0	3.29596	0.698696	0.825181	0.862511	0	0	0	2.04062	1.42012	0.285484	0.165593
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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