TCONS_00042996 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042996
Unique NameTCONS_00042996
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length413

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042996 ID=TCONS_00042996|Name=TCONS_00042996|organism=Clytia hemisphaerica|type=transcript|length=413bp
ATAAAAGATTATTACAAGGAGACTGCCGACCAGCAAGAACATGTTACCCA
ATAAATTAAAAACTTAATCATAAAGAGAAGGGAGAAGAAAAAGTAACAGT
TTGTTAAAGCCTATCAAAAGGAAGAacttttggcgggaatttaatttggg
gGGATGTCGAAAAAGTTTTCTCAGAGGAGTTTGATTTTGGGTAAATCTGC
CAAAATTTCTATTTGCCAAAATTCCTATTAGGGACTTGAAAATTGATTAT
GTAAATTtacatttatattttatttatcatGCTTACTTTAAAGTGCTCTC
AAGGTCCTGTAGTTTGAAAGTCGAAAAATCATTGTAAGGGGAGAGCTTTT
TGAGCGCAATAAAGAGTAGGCTATTCTTTTTTGATCTGTTTGCTTTCtcc
ttttttgtaaaat
Run BLAST on NCBI

transcript from alignment at sc0003840:589..1001

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042996 ID=TCONS_00042996|Name=TCONS_00042996|organism=Clytia hemisphaerica|type=transcript|length=413bp|location=Sequence derived from alignment at sc0003840:589..1001 (Clytia hemisphaerica)
attttacaaaaaaggaGAAAGCAAACAGATCAAAAAAGAATAGCCTACTC
TTTATTGCGCTCAAAAAGCTCTCCCCTTACAATGATTTTTCGACTTTCAA
ACTACAGGACCTTGAGAGCACTTTAAAGTAAGCatgataaataaaatata
aatgtaAATTTACATAATCAATTTTCAAGTCCCTAATAGGAATTTTGGCA
AATAGAAATTTTGGCAGATTTACCCAAAATCAAACTCCTCTGAGAAAACT
TTTTCGACATCCccccaaattaaattcccgccaaaagtTCTTCCTTTTGA
TAGGCTTTAACAAACTGTTACTTTTTCTTCTCCCTTCTCTTTATGATTAA
GTTTTTAATTTATTGGGTAACATGTTCTTGCTGGTCGGCAGTCTCCTTGT
AATAATCTTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026747XLOC_026747Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042996-exon-sc0003840-1491911889:589..1001TCONS_00042996-exon-sc0003840-1491911889:589..1001Clytia hemisphaericaexon
TCONS_00042996-exon-sc0003840-1510915933:589..1001TCONS_00042996-exon-sc0003840-1510915933:589..1001Clytia hemisphaericaexon
TCONS_00042996-exon-sc0003840-1575043694:589..1001TCONS_00042996-exon-sc0003840-1575043694:589..1001Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003840supercontigsc0003840:589..1001 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.218028	0	0	0	0.223589	0	0.439653	0	0.223197	0.115823	0.281517	0	0	0	0	0	0.548314	0.193454	0.249065	0	0.226743	0.5297	0	0	0	0.295137	0.225204	0.393328
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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