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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043018 ID=TCONS_00043018|Name=TCONS_00043018|organism=Clytia hemisphaerica|type=transcript|length=1224bp
CAGACAGTCCCCTTGAAACCTCCCATGGTTGCCCCTTCGACTGCTGGAAT
AGGCGGATTCTCTGAGATTCCATTACAAGGGGGTTCAGTACCATTACATG
CTGGATCTCTTGACGGACAAATGGCAGCAATGAACCTCTCATCCACCAAC
AGTTTCCAACAACCACCTCCATTGATGACCGCACCACTACTTACTAATAA
TCTACCACCCAATAATTTCCCTCCAACACAACCAACCAGCTTCACTCCAC
AGCCTCCAATGCACCCAACAAATTTTGTTCCCCAACAGCATATGCAGCCA
ACAAATTTCGCGACTCAGCCTCCGATGCAGGCAACCAATTACTCCCCACA
ACCAGCTATCCCACCAACGNCACAGCCTCCAATGCACCCAACAAATTTTG
TTCCCCAACAGCATATGCAGCCAACAAATTTCGCGACTCAGCCTCCGATG
CAGGCAACCAATTACTCCCCACAACCAGCTATCCCACCAACGAATTTCAC
ACCACAATCTATGACTCCACCACCTAGTCTACAACAATCGCAAACCACTC
CACCAGCGGCATCTCAGATCCCATCCGCCGTTGTACCGCCACAGCAAAAC
ATCTCACCCATGCAGCCGCCGCCACAATTACAACCAAACTTACCAACCAT
TATGTCAACTTCGACGGTCGGCTCTTATCAACCGGCAACTTTAGTTGCAA
CCGAATCGGCGCCACTCCACACCACACCCACTCAACCAACGATAAATGGT
TACCAAGCAAATCCCCCCATTAACAGTGGTGAAACGGCTTTTATACAACC
ACAGTATCAAACACAACCAATGCAACCTGCCCAACCACCTTCACAACTAT
TTGCAGCTCCCCCACAACTTCAGACCATACCCTCACAATACCAACAAGAC
CCTAATGTTATATTAGCAAAAACAACACCTTCAATGACAGACATTTCATT
AGATGGGTCACCTCAAATGATCCAGCATATCCCTTCTCAACTACCTGCTG
AGAGTGAACAAAATGTCAACTTGACATAAATACACATTTCTGAAATAGTT
TTTGAAGGATTTTTTTGGTCGTACATTGATCACTGGGGGGATTTATTGTG
AAGTGTGCTGGAATTGTATTCATTATATTATTTATGGaagataaattttt
atttttgtttattgttttagtttgttttcgaatttttcacaaaagaaaAT
CGACCATCCTCTTTAGAATATAAA Run BLAST on NCBI protein sequence of TCONS_00043018-protein >TCONS_00043018-protein ID=TCONS_00043018-protein|Name=TCONS_00043018-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp
QTVPLKPPMVAPSTAGIGGFSEIPLQGGSVPLHAGSLDGQMAAMNLSSTN
SFQQPPPLMTAPLLTNNLPPNNFPPTQPTSFTPQPPMHPTNFVPQQHMQP
TNFATQPPMQATNYSPQPAIPPTXQPPMHPTNFVPQQHMQPTNFATQPPM
QATNYSPQPAIPPTNFTPQSMTPPPSLQQSQTTPPAASQIPSAVVPPQQN
ISPMQPPPQLQPNLPTIMSTSTVGSYQPATLVATESAPLHTTPTQPTING
YQANPPINSGETAFIQPQYQTQPMQPAQPPSQLFAAPPQLQTIPSQYQQD
PNVILAKTTPSMTDISLDGSPQMIQHIPSQLPAESEQNVNLT Run BLAST on NCBI transcript from alignment at sc0003861:7720..9269- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043018 ID=TCONS_00043018|Name=TCONS_00043018|organism=Clytia hemisphaerica|type=transcript|length=1550bp|location=Sequence derived from alignment at sc0003861:7720..9269- (Clytia hemisphaerica)
CAGACAGTCCCCTTGAAACCTCCCATGGTTGCCCCTTCGACTGCTGGAAT
AGGCGGATTCTCTGAGGTAGGGGAATTTAATCTTTCGTTTACTGTCTGAA
CAAACCATTAAGATAGCATAAATGGTCAAAACAAAGCCCTTCTAATGTTT
ACTTTAGAGGGTTTGACTGTTTACCTACTCTTATTTAATGTAAAATTCTG
ATAGGTGCTTTGATCAATGGTAAATCTCACAGTTATTATTTACAATTACG
ATAAAGGAACTGATCGGTTCTCCTATCTTCTATTTTATTTCAATATCAAT
TATCCCCAATTTGAGGCAAAGAAATCAAGTATTTATTCGATAATGTAACA
CGCTTTTAGTAACTAGTTTCTTTATCTTCCATTTACCTACAGATTCCATT
ACAAGGGGGTTCAGTACCATTACATGCTGGATCTCTTGACGGACAAATGG
CAGCAATGAACCTCTCATCCACCAACAGTTTCCAACAACCACCTCCATTG
ATGACCGCACCACTACTTACTAATAATCTACCACCCAATAATTTCCCTCC
AACACAACCAACCAGCTTCACTCCACAGCCTCCAATGCACCCAACAAATT
TTGTTCCCCAACAGCATATGCAGCCAACAAATTTCGCGACTCAGCCTCCG
ATGCAGGCAACCAATTACTCCCCACAACCAGCTATCCCACCAACGNCACA
GCCTCCAATGCACCCAACAAATTTTGTTCCCCAACAGCATATGCAGCCAA
CAAATTTCGCGACTCAGCCTCCGATGCAGGCAACCAATTACTCCCCACAA
CCAGCTATCCCACCAACGAATTTCACACCACAATCTATGACTCCACCACC
TAGTCTACAACAATCGCAAACCACTCCACCAGCGGCATCTCAGATCCCAT
CCGCCGTTGTACCGCCACAGCAAAACATCTCACCCATGCAGCCGCCGCCA
CAATTACAACCAAACTTACCAACCATTATGTCAACTTCGACGGTCGGCTC
TTATCAACCGGCAACTTTAGTTGCAACCGAATCGGCGCCACTCCACACCA
CACCCACTCAACCAACGATAAATGGTTACCAAGCAAATCCCCCCATTAAC
AGTGGTGAAACGGCTTTTATACAACCACAGTATCAAACACAACCAATGCA
ACCTGCCCAACCACCTTCACAACTATTTGCAGCTCCCCCACAACTTCAGA
CCATACCCTCACAATACCAACAAGACCCTAATGTTATATTAGCAAAAACA
ACACCTTCAATGACAGACATTTCATTAGATGGGTCACCTCAAATGATCCA
GCATATCCCTTCTCAACTACCTGCTGAGAGTGAACAAAATGTCAACTTGA
CATAAATACACATTTCTGAAATAGTTTTTGAAGGATTTTTTTGGTCGTAC
ATTGATCACTGGGGGGATTTATTGTGAAGTGTGCTGGAATTGTATTCATT
ATATTATTTATGGAAGATAAATTTTTATTTTTGTTTATTGTTTTAGTTTG
TTTTCGAATTTTTCACAAAAGAAAATCGACCATCCTCTTTAGAATATAAA
Coding sequence (CDS) from alignment at sc0003861:7720..9269- >TCONS_00043018 ID=TCONS_00043018|Name=TCONS_00043018|organism=Clytia hemisphaerica|type=CDS|length=2058bp|location=Sequence derived from alignment at sc0003861:7720..9269- (Clytia hemisphaerica)
ATTCCATTACAAGGGGGTTCAGTACCATTACATGCTGGATCTCTTGACGG
ACAAATGGCAGCAATGAACCTCTCATCCACCAACAGTTTCCAACAACCAC
CTCCATTGATGACCGCACCACTACTTACTAATAATCTACCACCCAATAAT
TTCCCTCCAACACAACCAACCAGCTTCACTCCACAGCCTCCAATGCACCC
AACAAATTTTGTTCCCCAACAGCATATGCAGCCAACAAATTTCGCGACTC
AGCCTCCGATGCAGGCAACCAATTACTCCCCACAACCAGCTATCCCACCA
ACGNCACAGCCTCCAATGCACCCAACAAATTTTGTTCCCCAACAGCATAT
GCAGCCAACAAATTTCGCGACTCAGCCTCCGATGCAGGCAACCAATTACT
CCCCACAACCAGCTATCCCACCAACGAATTTCACACCACAATCTATGACT
CCACCACCTAGTCTACAACAATCGCAAACCACTCCACCAGCGGCATCTCA
GATCCCATCCGCCGTTGTACCGCCACAGCAAAACATCTCACCCATGCAGC
CGCCGCCACAATTACAACCAAACTTACCAACCATTATGTCAACTTCGACG
GTCGGCTCTTATCAACCGGCAACTTTAGTTGCAACCGAATCGGCGCCACT
CCACACCACACCCACTCAACCAACGATAAATGGTTACCAAGCAAATCCCC
CCATTAACAGTGGTGAAACGGCTTTTATACAACCACAGTATCAAACACAA
CCAATGCAACCTGCCCAACCACCTTCACAACTATTTGCAGCTCCCCCACA
ACTTCAGACCATACCCTCACAATACCAACAAGACCCTAATGTTATATTAG
CAAAAACAACACCTTCAATGACAGACATTTCATTAGATGGGTCACCTCAA
ATGATCCAGCATATCCCTTCTCAACTACCTGCTGAGAGTGAACAAAATGT
CAACTTGACATAACAGACAGTCCCCTTGAAACCTCCCATGGTTGCCCCTT
CGACTGCTGGAATAGGCGGATTCTCTGAGATTCCATTACAAGGGGGTTCA
GTACCATTACATGCTGGATCTCTTGACGGACAAATGGCAGCAATGAACCT
CTCATCCACCAACAGTTTCCAACAACCACCTCCATTGATGACCGCACCAC
TACTTACTAATAATCTACCACCCAATAATTTCCCTCCAACACAACCAACC
AGCTTCACTCCACAGCCTCCAATGCACCCAACAAATTTTGTTCCCCAACA
GCATATGCAGCCAACAAATTTCGCGACTCAGCCTCCGATGCAGGCAACCA
ATTACTCCCCACAACCAGCTATCCCACCAACGNCACAGCCTCCAATGCAC
CCAACAAATTTTGTTCCCCAACAGCATATGCAGCCAACAAATTTCGCGAC
TCAGCCTCCGATGCAGGCAACCAATTACTCCCCACAACCAGCTATCCCAC
CAACGAATTTCACACCACAATCTATGACTCCACCACCTAGTCTACAACAA
TCGCAAACCACTCCACCAGCGGCATCTCAGATCCCATCCGCCGTTGTACC
GCCACAGCAAAACATCTCACCCATGCAGCCGCCGCCACAATTACAACCAA
ACTTACCAACCATTATGTCAACTTCGACGGTCGGCTCTTATCAACCGGCA
ACTTTAGTTGCAACCGAATCGGCGCCACTCCACACCACACCCACTCAACC
AACGATAAATGGTTACCAAGCAAATCCCCCCATTAACAGTGGTGAAACGG
CTTTTATACAACCACAGTATCAAACACAACCAATGCAACCTGCCCAACCA
CCTTCACAACTATTTGCAGCTCCCCCACAACTTCAGACCATACCCTCACA
ATACCAACAAGACCCTAATGTTATATTAGCAAAAACAACACCTTCAATGA
CAGACATTTCATTAGATGGGTCACCTCAAATGATCCAGCATATCCCTTCT
CAACTACCTGCTGAGAGTGAACAAAATGTCAACTTGACATAACAGACAGT
CCCCTTGAAACCTCCCATGGTTGCCCCTTCGACTGCTGGAATAGGCGGAT
TCTCTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043018-exon-sc0003861-1575043694:9204..9269 | TCONS_00043018-exon-sc0003861-1575043694:9204..9269 | Clytia hemisphaerica | exon |
| TCONS_00043018-exon-sc0003861-1575043694:7720..8877 | TCONS_00043018-exon-sc0003861-1575043694:7720..8877 | Clytia hemisphaerica | exon |
| TCONS_00043018-exon-sc0003861-1510915933:9204..9269 | TCONS_00043018-exon-sc0003861-1510915933:9204..9269 | Clytia hemisphaerica | exon |
| TCONS_00043018-exon-sc0003861-1510915933:7720..8877 | TCONS_00043018-exon-sc0003861-1510915933:7720..8877 | Clytia hemisphaerica | exon |
| TCONS_00043018-exon-sc0003861-1491911889:9204..9269 | TCONS_00043018-exon-sc0003861-1491911889:9204..9269 | Clytia hemisphaerica | exon |
| TCONS_00043018-exon-sc0003861-1491911889:7720..8877 | TCONS_00043018-exon-sc0003861-1491911889:7720..8877 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003861 | supercontig | sc0003861:7720..9269 - |
Blast
The following BLAST results are available for this feature:
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