TCONS_00043021 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043021
Unique NameTCONS_00043021
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043021 ID=TCONS_00043021|Name=TCONS_00043021|organism=Clytia hemisphaerica|type=transcript|length=364bp
AATGCCTTGGGTATTATAGCCGTTGAAATCTGGTGAGCTATCCTTTAGCA
AAATGGATTTGATAAACTGAAAGTCTTCGTGATTAGCTCTTTCACGGAGG
ATAACTTGTTTACAGAATACTATCAATGAAAGCGGTTGGTTTAAGCTGAA
GTCTTTTGGCATTGGAGGGTTTTTCACTCCTTTGAAGTAGGATATTTTCG
GTTGTGTCAATTTAACGTTAGAAATATCCTCTTGTTTCAATCTTGGAATA
TCAGGTCCGTCAGATTTAGCTTCAAGTTTCTTCTGAGTTtgctcgggtga
aacaaggcatgtcccaaatatattttgcgtgacgcccaccgcttcccatt
attcattaactttc
Run BLAST on NCBI

transcript from alignment at sc0003862:4942..5305

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043021 ID=TCONS_00043021|Name=TCONS_00043021|organism=Clytia hemisphaerica|type=transcript|length=364bp|location=Sequence derived from alignment at sc0003862:4942..5305 (Clytia hemisphaerica)
gaaagttaatgaataatgggaagcggtgggcgtcacgcaaaatatatttg
ggacatgccttgtttcacccgagcaAACTCAGAAGAAACTTGAAGCTAAA
TCTGACGGACCTGATATTCCAAGATTGAAACAAGAGGATATTTCTAACGT
TAAATTGACACAACCGAAAATATCCTACTTCAAAGGAGTGAAAAACCCTC
CAATGCCAAAAGACTTCAGCTTAAACCAACCGCTTTCATTGATAGTATTC
TGTAAACAAGTTATCCTCCGTGAAAGAGCTAATCACGAAGACTTTCAGTT
TATCAAATCCATTTTGCTAAAGGATAGCTCACCAGATTTCAACGGCTATA
ATACCCAAGGCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026770XLOC_026770Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043021-exon-sc0003862-1491911889:4942..5305TCONS_00043021-exon-sc0003862-1491911889:4942..5305Clytia hemisphaericaexon
TCONS_00043021-exon-sc0003862-1510915933:4942..5305TCONS_00043021-exon-sc0003862-1510915933:4942..5305Clytia hemisphaericaexon
TCONS_00043021-exon-sc0003862-1575043694:4942..5305TCONS_00043021-exon-sc0003862-1575043694:4942..5305Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003862supercontigsc0003862:4942..5305 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.232457	0.448178	0	1.27815	1.23468	1.21957	3.26231	1.11032	2.8932	3.34692	6.26116	1.67778	1.3762	0.804636	1.04486	1.54166	2.2618	1.41741	4.63574	3.56454	0.448286	1.29532	0.524878	0.715786	0.491827	0	0.313852	0.335422	0.762146	0.52513
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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