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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043031 ID=TCONS_00043031|Name=TCONS_00043031|organism=Clytia hemisphaerica|type=transcript|length=1598bp
tttattaaaatttattgaaaatggattttaaaaaattctctcTTATCATG
TTCAGGTCAATAACGATGAAGTCCCGTGATCTTCGCTTTTGTACTTATGT
GAATATATGAACTTTTGAAGACtcgataaaaacaaaacaaaacaaaaatg
tgcAGTAGAAACCAAAACGAAGGGTGCACAAGATCTTGGCGCTGCTTGGC
GAAAAAACTCCATCAGAATCAACAAAATAATTACATCTACTggtataaag
aaaaaatgaacaccTCTTTTAGCTGAAAATATGAACTATACTACACGATC
TACACTAGAATCAGCTTTTGTTTCAAGAAAATCTGACACGcgttttatat
aatttgtcCAAGATAAAAATAAACTAAATCTGGGTTCACTACTTTATGCT
AACTCCCGAGACCTAtgttataccttatcgggggaaaatatttccccgac
attttatcacccgaccaaaacttgtacccgatttttttatccttgaccaa
aacatttacccaaaattcaaatctaatttttttatttgccgaaattagtg
ctttaaacatCGAATTGCAAGAtccattttcgagctagtgaaggaaacca
tttcttttggaTAATTTAGTCGGGttaaagtgacgaatttgaaattttgg
tcggggaaaagtgacgaaaatgcctctaggtgacgaaattttccccgacg
aaaaaaaccCGATtgaataaaactccgacattttttccccgataaggtag
caACAAATAGTGGATCAGGCTGTTGCAGCAAAGGATGTAACAGGGACCTA
TAGGATCTGGGATGGCAATTCCAATGAAAATGTGAAGTAAATTCTGCAAT
ACAATGtttaaatttatcaaattttaaaaattctaacAAGCTAGCACAAC
TTTCGATCTTAGTATTTTTGTAGGATTGCTGCACTTCTCGGGGTCATTGA
TGTTTAATCTGAATTAGTAGGTTAATCAACCGACATTTTTACGCAagatt
ttggagaaaataaagaaatcacggtctaaaaaggtttttatttattgata
tttttttacgttttttttataatttgaaattgataaaatttgaaataaat
agtTACAAACTTTGTAACATATTTTACAGATTGGATGCTGTAGCCCTtgt
acaataaaaatttttgattaaaattttgcttttttctttctatataaaat
tgtaatttgtggctctatgaattttttttcatcaaattttgttacttttt
acgtttttggtaCAGTACATATTTTATCGGTTTTGCTGTAGATATTTTGC
AGCTTATGTTTTCACTAGCTTAGTAATATGtgatcaaattataaaaatgt
taaattttgaagtttaaaaTAACAATGATCGCAGGCACCTCAAAATATTA
CAGATTAACTATATTAGTAACTGAAATAGCTGTAAATCTTCCGTTTTGTC
AACTTTTCTACACAATTCTGTTTATTACTTAGCGAAAATTAGCTATTAAT
TGTAAGCACATCATGTTATCAGCTTGTAATTTTTCCCTTTATATATTTAC
TTGGTAAATAAGTAGTAAAATAGCACTACAGGAGAAAATTGTCTCTCG Run BLAST on NCBI transcript from alignment at sc0003866:259..2545+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043031 ID=TCONS_00043031|Name=TCONS_00043031|organism=Clytia hemisphaerica|type=transcript|length=2287bp|location=Sequence derived from alignment at sc0003866:259..2545+ (Clytia hemisphaerica)
tttattaaaatttattgaaaatggattttaaaaaattctctcTTATCATG
TTCAGGTCAATAACGATGAAGTCCCGTGATCTTCGCTTTTGTACTTATGT
GAATGTAAGTTTTCATCTACTGCTGTTAGATTTTATCACGTTTTTATCAT
CAAACCAGTTCAGTCTAGGTTGCATTTTCAAGTTTATAGCATAAGATTGG
TCACGATCACGATCTTAAAACGGCCTCGACTAAATATATTTAGTCGAAAT
TTGAAGTGAATGCACGTTTCAACCACATATCTTATGTAAAACACAAACAC
TATATAAAGCTACTCAGTATTTCCCAAGTCACGGCAGTTGAAGCAAAATT
AATGCACCATCTTTGCTGAGTAGACCATAGTAATAGACcagttcggtacc
ggcaatttgttcaatcaaacaaaaaaacctGAATGGTGCGAAGCGAGGGG
CGAGAGAATGGACTAAATCGATAAAATAGCCGGTACCATAGTGTGGTCTA
TTAAAGATAGCGGATTATTTTGCTTCGGCTAGGAACAAAGAAGTTCCAAC
CAGAGTATTATGTAAGATAATTATGGTTTCAACCCTTAATGCGTGATGAG
ACTTGTGCAGAGTTTATTAAAGAAAGAATCACGTAAAAATGCATGAATAT
GTTATAGAgaatcaatttcattttgacatCATCCATCTTCTCACGCTTTG
AGGGTTGGCAGGTGGATTGACAGAATCAAGCCATTTTTCTCGCCCAGTTT
TCTCGTGATTTGGTCATGTTTACTTCTCTCAATTTGATTACAGATATGAA
CTTTTGAAGACtcgataaaaacaaaacaaaacaaaaatgtgcAGTAGAAA
CCAAAACGAAGGGTGCACAAGATCTTGGCGCTGCTTGGCGAAAAAACTCC
ATCAGAATCAACAAAATAATTACATCTACTggtataaagaaaaaatgaac
accTCTTTTAGCTGAAAATATGAACTATACTACACGATCTACACTAGAAT
CAGCTTTTGTTTCAAGAAAATCTGACACGcgttttatataatttgtcCAA
GATAAAAATAAACTAAATCTGGGTTCACTACTTTATGCTAACTCCCGAGA
CCTAtgttataccttatcgggggaaaatatttccccgacattttatcacc
cgaccaaaacttgtacccgatttttttatccttgaccaaaacatttaccc
aaaattcaaatctaatttttttatttgccgaaattagtgctttaaacatC
GAATTGCAAGAtccattttcgagctagtgaaggaaaccatttcttttgga
TAATTTAGTCGGGttaaagtgacgaatttgaaattttggtcggggaaaag
tgacgaaaatgcctctaggtgacgaaattttccccgacgaaaaaaaccCG
ATtgaataaaactccgacattttttccccgataaggtagcaACAAATAGT
GGATCAGGCTGTTGCAGCAAAGGATGTAACAGGGACCTATAGGATCTGGG
ATGGCAATTCCAATGAAAATGTGAAGTAAATTCTGCAATACAATGtttaa
atttatcaaattttaaaaattctaacAAGCTAGCACAACTTTCGATCTTA
GTATTTTTGTAGGATTGCTGCACTTCTCGGGGTCATTGATGTTTAATCTG
AATTAGTAGGTTAATCAACCGACATTTTTACGCAagattttggagaaaat
aaagaaatcacggtctaaaaaggtttttatttattgatatttttttacgt
tttttttataatttgaaattgataaaatttgaaataaatagtTACAAACT
TTGTAACATATTTTACAGATTGGATGCTGTAGCCCTtgtacaataaaaat
ttttgattaaaattttgcttttttctttctatataaaattgtaatttgtg
gctctatgaattttttttcatcaaattttgttactttttacgtttttggt
aCAGTACATATTTTATCGGTTTTGCTGTAGATATTTTGCAGCTTATGTTT
TCACTAGCTTAGTAATATGtgatcaaattataaaaatgttaaattttgaa
gtttaaaaTAACAATGATCGCAGGCACCTCAAAATATTACAGATTAACTA
TATTAGTAACTGAAATAGCTGTAAATCTTCCGTTTTGTCAACTTTTCTAC
ACAATTCTGTTTATTACTTAGCGAAAATTAGCTATTAATTGTAAGCACAT
CATGTTATCAGCTTGTAATTTTTCCCTTTATATATTTACTTGGTAAATAA
GTAGTAAAATAGCACTACAGGAGAAAATTGTCTCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043031-exon-sc0003866-1491911889:259..362 | TCONS_00043031-exon-sc0003866-1491911889:259..362 | Clytia hemisphaerica | exon |
| TCONS_00043031-exon-sc0003866-1510915933:259..362 | TCONS_00043031-exon-sc0003866-1510915933:259..362 | Clytia hemisphaerica | exon |
| TCONS_00043031-exon-sc0003866-1575043694:259..362 | TCONS_00043031-exon-sc0003866-1575043694:259..362 | Clytia hemisphaerica | exon |
| TCONS_00043031-exon-sc0003866-1491911889:1052..2545 | TCONS_00043031-exon-sc0003866-1491911889:1052..2545 | Clytia hemisphaerica | exon |
| TCONS_00043031-exon-sc0003866-1510915933:1052..2545 | TCONS_00043031-exon-sc0003866-1510915933:1052..2545 | Clytia hemisphaerica | exon |
| TCONS_00043031-exon-sc0003866-1575043694:1052..2545 | TCONS_00043031-exon-sc0003866-1575043694:1052..2545 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003866 | supercontig | sc0003866:259..2545 + |
Blast
The following BLAST results are available for this feature:
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