TCONS_00043033 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043033
Unique NameTCONS_00043033
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1893

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043033 ID=TCONS_00043033|Name=TCONS_00043033|organism=Clytia hemisphaerica|type=transcript|length=1893bp
GCCCTGAATGCCACAAAATGGTCCCCGACCTCCCGAAACACACTAGAGAT
ACGCATCAGTGGTCATACACCAGTTCTGTGAATGTGGTTGGGCTATTTGG
TCTTCGGAAGAAAGTTGAAACAAAATCTACAACAACCGCACCAAAATACA
AACATTACATCAAGATATGTCCTTTCCCAGATTGTAAAGGTACAACAAAA
AACCCTGGTGAGCAtctaaaaggaaaaaaacatGGGTATACTGCCGAAAA
ATTGAAAGACCCCAAAGTGAAAGAAACATACGATAGTCTAATAAAATTAT
TCAAACGATACGACTCCGACCAACAGATCAATCAATATAAAGTTGGTTCA
CCTCAAAAGTTTCACGGTATTGTAGAAAAGAGATCCAAACGAACTGCTAT
GGAATCTAGTCTACTAGTGGAAGATGAAGTTACGGACGACGAATACGATG
AAGATATCCGAAATATCGGAGAAGAAGTCGAAGAAGAAGTCGAAGAAGAA
AACTCTGACGCGCTTATTAGTGATAGACATTCTGTTGAAAAACTCATTAA
GTCCTTCGAAAAGTATATGGTCGGCCCATACCGCGGGCGAAAGTCGACAT
CAGTCAAAGTAGTTGCAGATGATGTCAGAAGGAGTTTTCGCGTGATGAAC
GTCATGGATATAGAAGATCTAGAAGCAATGGTAAAAAGCGACGAGCGTCT
CTTAGAATATATTGAACATtgcaaaaaccaaaatttcctccCTGGAACAA
CCAAAACCTATCTTAGTGCCATAATGGACTTTCTGAACTTTCTTGCTCAA
AACAAGGAACACCAAGTCAGTATCAGTAACATATTGAAAACAGAAAAGAT
GTTAGAACAATGGAAAAAACGATTCAACCGAGATGATCGCATCCAAAGTC
ACAGAAGATAAGCCGAGGATAGGCAAATGTTGCTCACTAAAGAGCAAGTA
CTGAGATATGACACCAGCGATTTTAAAAACTGTGCTCTTAAAATCTTGAA
GGAGTTCAAGGAAAATCCATCCAAAACTCTGAAACGTTCAGAACATACCA
AGTTGAAGGACTACTTCATTACTGAAATAGCCTTAGCCAATGCCCACCGT
AGTGGCGTATCTGTCCACATGACAATGGAGGAATATCGTGGACATTTTAC
GGATGAAGATTTTGAGAAGATTCCGGTGTGGAATCACAAAACCGTATCAT
CATATGGTGCCGCACCTGTATGTTTAAGACCCGCTGCTTTTGACTGTTTG
AGAACATATGTGGATGTTGTAAGACCAAAATTGAATCCCACATGCCAACA
AGTCCTCGTAACATGGGGAAGAGAGCCTCTACAGGATTCCGACCCATCAA
AGGCAGTTCATAGGATTTGGGAAAAATGTGGAAACTTCGAGGGTCGTGAA
ATTCCCAAAAACCTTACAATTAATCATATAAGGAAATCTGCTTCCACCTT
GTCAAGGAAAGAACGCAACCCGCATCTCAAGGAGATTGCAACGCTAATGG
CTCACAGTGAAAAAACTGCTAACATGCATTACGACATGTTTGACCGTGAC
AATGCATGTACAGTTGGAGCCAGACAAATTGAGAAATTGTTTCGAGGTAC
TACGGATGAAACGGAAATCCAGAAAACACCTTCTAAATCGAAAATTCAGG
AAACACCTGAAACGAAAATCCAGAAAACACCTTCTAAAACGGAAAGGAAG
AATTGGACGAACGAGGAGGAGTCTGTGTTAATGGAAGCGATTAAAAATCA
CACACCAGTCAAAGAGATAGATGTAAATGCAACTGATCGGAAAAAAAGAG
ACAAAATTAGACATTTAAAGAAAAAGGCCTATCCTGTCAGCCCCTCAACC
AGCATAGATTCTTCTGATCCTGGAACACCTGAAAGTCCAATCT
Run BLAST on NCBI

protein sequence of TCONS_00043033-protein

>TCONS_00043033-protein ID=TCONS_00043033-protein|Name=TCONS_00043033-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MLLTKEQVLRYDTSDFKNCALKILKEFKENPSKTLKRSEHTKLKDYFITE
IALANAHRSGVSVHMTMEEYRGHFTDEDFEKIPVWNHKTVSSYGAAPVCL
RPAAFDCLRTYVDVVRPKLNPTCQQVLVTWGREPLQDSDPSKAVHRIWEK
CGNFEGREIPKNLTINHIRKSASTLSRKERNPHLKEIATLMAHSEKTANM
HYDMFDRDNACTVGARQIEKLFRGTTDETEIQKTPSKSKIQETPETKIQK
TPSKTERKNWTNEEESVLMEAIKNHTPVKEIDVNATDRKKRDKIRHLKKK
AYPVSPSTSIDSSDPGTPESPI
Run BLAST on NCBI

transcript from alignment at sc0003867:802..4252-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043033 ID=TCONS_00043033|Name=TCONS_00043033|organism=Clytia hemisphaerica|type=transcript|length=3451bp|location=Sequence derived from alignment at sc0003867:802..4252- (Clytia hemisphaerica)
GCCCTGAATGCCACAAAATGGTCCCCGACCTCCCGAAACACACTAGAGAT
ACGCATCAGTGGTCATACACCAGTTCTGTGAATGTGGTTGGGCTATTTGG
TCTTCGGAAGAAAGTTGAAACAAAATCTACAACAACCGCACCAAAATACA
AACATTACATCAAGATATGTCCTTTCCCAGATTGTAAAGGTACAACAAAA
AACCCTGGTGAGCATCTAAAAGGAAAAAAACATGGGTATACTGCCGAAAA
ATTGAAAGACCCCAAAGTGAAAGAAACATACGATAGTCTAATAAAATTAT
TCAAACGATACGACTCCGACCAACAGATCAATCAATATAAAGTTGGTTCA
CCTCAAAAGTTTCACGGTATTGTAGAAAAGAGATCCAAACGAACTGCTAT
GGAATCTAGTCTACTAGTGGAAGATGAAGTTACGGACGACGAATACGATG
AAGATATCCGAAATATCGGAGAAGAAGTCGAAGAAGAAGTCGAAGAAGAA
AACTCTGACGCGCTTATTAGTGATAGACATTCTGTTGAAAAACTCATTAA
GTCCTTCGAAAAGTATATGGTCGGCCCATACCGCGGGCGAAAGTCGACAT
CAGTCAAAGTAGTTGCAGATGATGTCAGAAGGAGTTTTCGCGTGATGAAC
GTCATGGATATAGAAGATCTAGAAGCAATGGTAAAAAGCGACGAGCGTCT
CTTAGAATATATTGAACATTGCAAAAACCAAAATTTCCTCCCTGGAACAA
CCAAAACCTATCTTAGTGCCATAATGGACTTTCTGAACTTTCTTGCTCAA
AACAAGGAACACCAAGTCAGTATCAGTAACATATTGAAAACAGAAAAGAT
GTTAGAACAATGGAAAAAACGATTCAACCGAGATGATCGCATCCAAAGTC
ACAGAAGATAAGCCGAGGATAGGCAAATGTTGCTCACTAAAGAGCAAGTA
CTGAGATATGACACCAGCGATTTTAAAAACTGTGCTCTTAAAATCTTGAA
GGAGTTCAAGGAAAATCCATCCAAAACTCTGAAACGTTCAGAACATACCA
AGTTGAAGGACTACTTCATTACTGAAATAGCCTTAGCCAATGCCCACCGT
AGTGGCGTATCTGTCCACATGACAATGGAGGAATATCGTGGACATTTTAC
GGATGAAGATTTTGAGAAGATTCCGGTGTGGAATCACAAAACCGTATCAT
CATATGGTGCCGCACCTGTATGTTTAAGACCCGCTGCTTTTGACTGTTTG
AGAACATATGTGGATGTTGTAAGACCAAAATTGAATCCCACATGCCAACA
AGTCCTCGTAACATGGGGAAGAGAGCCTCTACAGGATTCCGACCCATCAA
AGGCAGTTCATAGGATTTGGGAAAAATGTGGAAACTTCGAGGGTCGTGAA
ATTCCCAAAAACCTTACAATTAATCATATAAGGAAATCTGCTTCCACCTT
GTCAAGGAAAGAACGCAACCCGCATCTCAAGGAGATTGCAACGCTAATGG
CTCACAGTGAAAAAACTGCTAACATGCATTACGACATGTTTGACCGTGAC
AATGCATGTACAGTTGGAGCCAGACAAATTGAGAAATTGTTTCGAGGTAA
ATTTATAATTGATGACGTGTAGAATGATAGTAAACAATATGAGAGTGATT
TTTTAGGCGCTTTGAAAATCCAATTTGAAGACCGACGATTTCCATTATCT
TTTTTTCGAAAATCACTATCCATCAAATATATCCACAGTCTAGGGCATAG
AAGGGGTTTGAAAAGAGACACGGGCGGAAAGGAAGAGAAAGAGGTCAGCC
ACATGTGGATGTCCTTTTTTGAAATACATTCCACTCAAGTCATGTTTTGC
CGACCTTCTTTATGGATGATCTCTTCTGACAACAATTTAAATTCTAACTG
ATTTCTCTCACACGTACACACACATTCTGCATGTTATGGAGAATTTCTTT
ATCAATTAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACATGGGGAAGAGAGCCT
CTACAGGATTCCGACCCATCAAAGGCAGTTCATAGGATTTGGGAAAAATG
TGGAAACTTCGAGGGTCGTGAAATTCCCAAAAACCTTACAATTAATCATA
TAAGGAAATCTGCTTCCACCTTGTCAAGGAAAGAACGCAACCCGCATCTC
AAGGAGATTGCAACGCTAATGGCTCACAGTGAAAAAACTGCTAACATGCA
TTACGACATGTTTGACCGTGACAATGCATGTACAGTTGGAGCCAGACAAA
TTGAGAAATTGTTTCGAGGTAAATTTATAATTGATGACGTGTAGAATGAT
AGTAAACAATATGAGAGTGATTTTTTAGGCACTTTGAAAATCCAATTTGA
AGACCGACGATTTCCATTATCTTTTTTTCGAAAATCACTATCCATCAAAT
ATATCCACAGTCTAGGGCATAGAAGGGGTTTGAAAAGAGACACGGGCGGA
AAGGAAGGGAAAGAGGTCAGCAACATGTGGATGTCCTTTTTTGAAATACA
TTCCACTCAAGTCATGTTTTGCCGACCTTCTTTATGGATGATCTCTTCTG
ACAACAATTTAAATTCTAACTGATTTCTCTCACACGTACACACACATTCT
GCATGTTATGGAGAATTTCTTTATCAATTAGAAGTTTTTTTCTGTTTATG
TTAGGTACTACGGATGAAACGGAAATCCAGAAAACACCTTCTAAATCGAA
AATTCAGGAAACACCTGAAACGAAAATCCAGAAAACACCTTCTAAAACGG
AAAGGAAGAATTGGACGAACGAGGAGGAGTCTGTGTTAATGGAAGCGATT
AAAAATCACACACCAGTCAAAGAGATAGATGTAAATGCAACTGATCGGAA
AAAAAGAGACAAAATTAGACATTTAAAGAAAAAGGCCTATCCTGTCAGCC
CCTCAACCAGCATAGATTCTTCTGATCCTGGAACACCTGAAAGTCCAATC
T

Coding sequence (CDS) from alignment at sc0003867:802..4252-

>TCONS_00043033 ID=TCONS_00043033|Name=TCONS_00043033|organism=Clytia hemisphaerica|type=CDS|length=1932bp|location=Sequence derived from alignment at sc0003867:802..4252- (Clytia hemisphaerica)
GTACTACGGATGAAACGGAAATCCAGAAAACACCTTCTAAATCGAAAATT
CAGGAAACACCTGAAACGAAAATCCAGAAAACACCTTCTAAAACGGAAAG
GAAGAATTGGACGAACGAGGAGGAGTCTGTGTTAATGGAAGCGATTAAAA
ATCACACACCAGTCAAAGAGATAGATGTAAATGCAACTGATCGGAAAAAA
AGAGACAAAATTAGACATTTAAAGAAAAAGGCCTATCCTGTCAGCCCCTC
AACCAGCATAGATTCTTCTGATCCTGGAACACCTGAAAGTCCAATCATGT
TGCTCACTAAAGAGCAAGTACTGAGATATGACACCAGCGATTTTAAAAAC
TGTGCTCTTAAAATCTTGAAGGAGTTCAAGGAAAATCCATCCAAAACTCT
GAAACGTTCAGAACATACCAAGTTGAAGGACTACTTCATTACTGAAATAG
CCTTAGCCAATGCCCACCGTAGTGGCGTATCTGTCCACATGACAATGGAG
GAATATCGTGGACATTTTACGGATGAAGATTTTGAGAAGATTCCGGTGTG
GAATCACAAAACCGTATCATCATATGGTGCCGCACCTGTATGTTTAAGAC
CCGCTGCTTTTGACTGTTTGAGAACATATGTGGATGTTGTAAGACCAAAA
TTGAATCCCACATGCCAACAAGTCCTCGTAACATGGGGAAGAGAGCCTCT
ACAGGATTCCGACCCATCAAAGGCAGTTCATAGGATTTGGGAAAAATGTG
GAAACTTCGAGGGTCGTGAAATTCCCAAAAACCTTACAATTAATCATATA
AGGAAATCTGCTTCCACCTTGTCAAGGAAAGAACGCAACCCGCATCTCAA
GGAGATTGCAACGCTAATGGCTCACAGTGAAAAAACTGCTAACATGCATT
ACGACATGTTTGACCGTGACAATGCATGTACAGTTGGAGCCAGACAAATT
GAGAAATTGTTTCGAGGTACTACGGATGAAACGGAAATCCAGAAAACACC
TTCTAAATCGAAAATTCAGGAAACACCTGAAACGAAAATCCAGAAAACAC
CTTCTAAAACGGAAAGGAAGAATTGGACGAACGAGGAGGAGTCTGTGTTA
ATGGAAGCGATTAAAAATCACACACCAGTCAAAGAGATAGATGTAAATGC
AACTGATCGGAAAAAAAGAGACAAAATTAGACATTTAAAGAAAAAGGCCT
ATCCTGTCAGCCCCTCAACCAGCATAGATTCTTCTGATCCTGGAACACCT
GAAAGTCCAATCATGTTGCTCACTAAAGAGCAAGTACTGAGATATGACAC
CAGCGATTTTAAAAACTGTGCTCTTAAAATCTTGAAGGAGTTCAAGGAAA
ATCCATCCAAAACTCTGAAACGTTCAGAACATACCAAGTTGAAGGACTAC
TTCATTACTGAAATAGCCTTAGCCAATGCCCACCGTAGTGGCGTATCTGT
CCACATGACAATGGAGGAATATCGTGGACATTTTACGGATGAAGATTTTG
AGAAGATTCCGGTGTGGAATCACAAAACCGTATCATCATATGGTGCCGCA
CCTGTATGTTTAAGACCCGCTGCTTTTGACTGTTTGAGAACATATGTGGA
TGTTGTAAGACCAAAATTGAATCCCACATGCCAACAAGTCCTCGTAACAT
GGGGAAGAGAGCCTCTACAGGATTCCGACCCATCAAAGGCAGTTCATAGG
ATTTGGGAAAAATGTGGAAACTTCGAGGGTCGTGAAATTCCCAAAAACCT
TACAATTAATCATATAAGGAAATCTGCTTCCACCTTGTCAAGGAAAGAAC
GCAACCCGCATCTCAAGGAGATTGCAACGCTAATGGCTCACAGTGAAAAA
ACTGCTAACATGCATTACGACATGTTTGACCGTGACAATGCATGTACAGT
TGGAGCCAGACAAATTGAGAAATTGTTTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026777XLOC_026777Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043033-proteinTCONS_00043033-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043033-exon-sc0003867-1575043694:2657..4252TCONS_00043033-exon-sc0003867-1575043694:2657..4252Clytia hemisphaericaexon
TCONS_00043033-exon-sc0003867-1575043694:802..1098TCONS_00043033-exon-sc0003867-1575043694:802..1098Clytia hemisphaericaexon
TCONS_00043033-exon-sc0003867-1510915933:2657..4252TCONS_00043033-exon-sc0003867-1510915933:2657..4252Clytia hemisphaericaexon
TCONS_00043033-exon-sc0003867-1510915933:802..1098TCONS_00043033-exon-sc0003867-1510915933:802..1098Clytia hemisphaericaexon
TCONS_00043033-exon-sc0003867-1491911889:2657..4252TCONS_00043033-exon-sc0003867-1491911889:2657..4252Clytia hemisphaericaexon
TCONS_00043033-exon-sc0003867-1491911889:802..1098TCONS_00043033-exon-sc0003867-1491911889:802..1098Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003867supercontigsc0003867:802..4252 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.505621	0.349251	0.181626	0.116686	1.58638	0.911693	0.515587	1.09409	0.428057	0.418593	0.725704	0.178056	0.337835	0.567487	0.25122	0.423585	0.361262	0.473137	0.170521	0.208178	0.346278	0.37825	0.169089	0.241571	0.565482	0.512362	0.0366594	0.117372	0.1403	0.181399
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat
IPR011010DNA_brk_join_enz
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043033 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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