TCONS_00043042 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043042
Unique NameTCONS_00043042
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length383

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043042 ID=TCONS_00043042|Name=TCONS_00043042|organism=Clytia hemisphaerica|type=transcript|length=383bp
TTGTTTTCATAGTATTTATAACTGTATTCAGTTATACTAGAAAGATTTTC
TGTCTTACGTCTCTTTTGCTTgatttcctctgaatgattttCATAATGTC
GCTTTTGCCTTGTTNNNNNNNNNNTACGTCTCTTTTGCTTgatttcctct
gaatgattttCATAATGTCGCTTTTgccttgttttattttgatgttgacG
TCCATGTTTTTCTGCACTGTTTTGAAGGTAATCAATATATAACACtgttt
ttttaaagttattcaatttttttactaagTTGCTTTGATTCTCAGAAAAA
TTTACTTCTATATAAGCTATTTTAATGTGGTGCAATCCATCATGGATGGA
ACAAACATAATTGGTTACATCATCCAAAGCTGA
Run BLAST on NCBI

protein sequence of TCONS_00043042-protein

>TCONS_00043042-protein ID=TCONS_00043042-protein|Name=TCONS_00043042-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
SALDDVTNYVCSIHDGLHHIKIAYIEVNFSENQSNLVKKLNNFKKTVLYI
DYLQNSAEKHGRQHQNKTRQKRHYENHSEEIKQKRRXXXXTRQKRHYENH
SEEIKQKRRKTENLSSITEYSYKYYEN
Run BLAST on NCBI

transcript from alignment at sc0003879:8881..9263

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043042 ID=TCONS_00043042|Name=TCONS_00043042|organism=Clytia hemisphaerica|type=transcript|length=383bp|location=Sequence derived from alignment at sc0003879:8881..9263 (Clytia hemisphaerica)
TCAGCTTTGGATGATGTAACCAATTATGTTTGTTCCATCCATGATGGATT
GCACCACATTAAAATAGCTTATATAGAAGTAAATTTTTCTGAGAATCAAA
GCAActtagtaaaaaaattgaataactttaaaaaaacaGTGTTATATATT
GATTACCTTCAAAACAGTGCAGAAAAACATGGACgtcaacatcaaaataa
aacaaggcAAAAGCGACATTATGaaaatcattcagaggaaatcAAGCAAA
AGAGACGTANNNNNNNNNNAACAAGGCAAAAGCGACATTATGaaaatcat
tcagaggaaatcAAGCAAAAGAGACGTAAGACAGAAAATCTTTCTAGTAT
AACTGAATACAGTTATAAATACTATGAAAACAA

Coding sequence (CDS) from alignment at sc0003879:8881..9263

>TCONS_00043042 ID=TCONS_00043042|Name=TCONS_00043042|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at sc0003879:8881..9263 (Clytia hemisphaerica)
TCAGCTTTGGATGATGTAACCAATTATGTTTGTTCCATCCATGATGGATT
GCACCACATTAAAATAGCTTATATAGAAGTAAATTTTTCTGAGAATCAAA
GCAActtagtaaaaaaattgaataactttaaaaaaacaGTGTTATATATT
GATTACCTTCAAAACAGTGCAGAAAAACATGGACgtcaacatcaaaataa
aacaaggcAAAAGCGACATTATGaaaatcattcagaggaaatcAAGCAAA
AGAGACGTANNNNNNNNNNAACAAGGCAAAAGCGACATTATGaaaatcat
tcagaggaaatcAAGCAAAAGAGACGTAAGACAGAAAATCTTTCTAGTAT
AACTGAATACAGTTATAAATACTATGAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026786XLOC_026786Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043042-exon-sc0003879-1491911889:8881..9263TCONS_00043042-exon-sc0003879-1491911889:8881..9263Clytia hemisphaericaexon
TCONS_00043042-exon-sc0003879-1510915933:8881..9263TCONS_00043042-exon-sc0003879-1510915933:8881..9263Clytia hemisphaericaexon
TCONS_00043042-exon-sc0003879-1575043694:8881..9263TCONS_00043042-exon-sc0003879-1575043694:8881..9263Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043042-proteinTCONS_00043042-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003879supercontigsc0003879:8881..9263 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.86754	3.71369	1.47109	2.90439	1.9958	1.41081	1.7548	0.766669	0.831859	3.61835	1.0561	6.75164	0.506021	2.59188	0.582417	0.527874	0.527869	0	2.18828	1.29763	4.32812	3.84522	1.40269	1.93095	2.44973	2.17941	3.63061	4.0615	1.79162	1.47657
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043042 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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