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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043060 ID=TCONS_00043060|Name=TCONS_00043060|organism=Clytia hemisphaerica|type=transcript|length=761bp
CGTCGATGTCAAACGAACTAATAGCTTCGGCGTCGAACGAAGACATGATG
TCAACGTTTTGCGAATCAACGAATTCAATTTCAAGTAAAAGGGTGACTTC
TGCGCGGAACGAAGGAAAAACGTTGGCGACAAAATCAGCAATGTCGGTGT
CAGGTTTGGGAATGTCGACGTCAGTGACAACGTCCTTGTCAGTGATGACC
TTTGCGTCAGATGGAATGATGTCGCCGCCAGATGAAGANACAACGTCCTT
GTCAGTGATGACCTTTGCGTCAGATGGAATGATGTCGCCGCCAGATGAAG
AGATGACGTCGGCGTCAGATAAGATAACGTCGGCGTCTTGTAAAGATTCT
TTCAGAACGAACGACTCCTTCCAAAACAGGTACGTCTCTTGTACCTCTGC
GACTTCCGAGTCAATAAAAGCGAATCGTTCCATAATTGTATCGTCCATAT
CATGAGTCCAATCTTCTCGTTGGCCGATATGTCTTACACAAGCTTTCGAA
ATTTCAATAAGTTCAACATGAAGAAGATCCAGAGTGTTCCATTCAAGTTC
AATTGTCGAAACATTCTCTTGTTTCTCAATACTTTTGCTCAACTTCAAGC
AATACATCAAAACCTGCAACTCAGCATCCTGGAGTTGTTGTATCAGGTTT
TCCTCGGTAGACCTCATATCAAGAGGGAGCCACAGTGTGTTGTCTTGGTT
CAAAAGGAGTGTTTTCACTGTAAATGCCGCACCAGACGTCTGATTCAAAC
GACACTTAAGN Run BLAST on NCBI protein sequence of TCONS_00043060-protein >TCONS_00043060-protein ID=TCONS_00043060-protein|Name=TCONS_00043060-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
LKCRLNQTSGAAFTVKTLLLNQDNTLWLPLDMRSTEENLIQQLQDAELQV
LMYCLKLSKSIEKQENVSTIELEWNTLDLLHVELIEISKACVRHIGQRED
WTHDMDDTIMERFAFIDSEVAEVQETYLFWKESFVLKESLQDADVILSDA
DVISSSGGDIIPSDAKVITDKDVXSSSGGDIIPSDAKVITDKDVVTDVDI
PKPDTDIADFVANVFPSFRAEVTLLLEIEFVDSQNVDIMSSFDAEAISSF
DID Run BLAST on NCBI transcript from alignment at sc0003895:8405..9165 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043060 ID=TCONS_00043060|Name=TCONS_00043060|organism=Clytia hemisphaerica|type=transcript|length=761bp|location=Sequence derived from alignment at sc0003895:8405..9165 (Clytia hemisphaerica)
NCTTAAGTGTCGTTTGAATCAGACGTCTGGTGCGGCATTTACAGTGAAAA
CACTCCTTTTGAACCAAGACAACACACTGTGGCTCCCTCTTGATATGAGG
TCTACCGAGGAAAACCTGATACAACAACTCCAGGATGCTGAGTTGCAGGT
TTTGATGTATTGCTTGAAGTTGAGCAAAAGTATTGAGAAACAAGAGAATG
TTTCGACAATTGAACTTGAATGGAACACTCTGGATCTTCTTCATGTTGAA
CTTATTGAAATTTCGAAAGCTTGTGTAAGACATATCGGCCAACGAGAAGA
TTGGACTCATGATATGGACGATACAATTATGGAACGATTCGCTTTTATTG
ACTCGGAAGTCGCAGAGGTACAAGAGACGTACCTGTTTTGGAAGGAGTCG
TTCGTTCTGAAAGAATCTTTACAAGACGCCGACGTTATCTTATCTGACGC
CGACGTCATCTCTTCATCTGGCGGCGACATCATTCCATCTGACGCAAAGG
TCATCACTGACAAGGACGTTGTNTCTTCATCTGGCGGCGACATCATTCCA
TCTGACGCAAAGGTCATCACTGACAAGGACGTTGTCACTGACGTCGACAT
TCCCAAACCTGACACCGACATTGCTGATTTTGTCGCCAACGTTTTTCCTT
CGTTCCGCGCAGAAGTCACCCTTTTACTTGAAATTGAATTCGTTGATTCG
CAAAACGTTGACATCATGTCTTCGTTCGACGCCGAAGCTATTAGTTCGTT
TGACATCGACG Coding sequence (CDS) from alignment at sc0003895:8405..9165 >TCONS_00043060 ID=TCONS_00043060|Name=TCONS_00043060|organism=Clytia hemisphaerica|type=CDS|length=759bp|location=Sequence derived from alignment at sc0003895:8405..9165 (Clytia hemisphaerica)
CTTAAGTGTCGTTTGAATCAGACGTCTGGTGCGGCATTTACAGTGAAAAC
ACTCCTTTTGAACCAAGACAACACACTGTGGCTCCCTCTTGATATGAGGT
CTACCGAGGAAAACCTGATACAACAACTCCAGGATGCTGAGTTGCAGGTT
TTGATGTATTGCTTGAAGTTGAGCAAAAGTATTGAGAAACAAGAGAATGT
TTCGACAATTGAACTTGAATGGAACACTCTGGATCTTCTTCATGTTGAAC
TTATTGAAATTTCGAAAGCTTGTGTAAGACATATCGGCCAACGAGAAGAT
TGGACTCATGATATGGACGATACAATTATGGAACGATTCGCTTTTATTGA
CTCGGAAGTCGCAGAGGTACAAGAGACGTACCTGTTTTGGAAGGAGTCGT
TCGTTCTGAAAGAATCTTTACAAGACGCCGACGTTATCTTATCTGACGCC
GACGTCATCTCTTCATCTGGCGGCGACATCATTCCATCTGACGCAAAGGT
CATCACTGACAAGGACGTTGTNTCTTCATCTGGCGGCGACATCATTCCAT
CTGACGCAAAGGTCATCACTGACAAGGACGTTGTCACTGACGTCGACATT
CCCAAACCTGACACCGACATTGCTGATTTTGTCGCCAACGTTTTTCCTTC
GTTCCGCGCAGAAGTCACCCTTTTACTTGAAATTGAATTCGTTGATTCGC
AAAACGTTGACATCATGTCTTCGTTCGACGCCGAAGCTATTAGTTCGTTT
GACATCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043060-exon-sc0003895-1491911889:8405..9165 | TCONS_00043060-exon-sc0003895-1491911889:8405..9165 | Clytia hemisphaerica | exon |
| TCONS_00043060-exon-sc0003895-1510915933:8405..9165 | TCONS_00043060-exon-sc0003895-1510915933:8405..9165 | Clytia hemisphaerica | exon |
| TCONS_00043060-exon-sc0003895-1575043694:8405..9165 | TCONS_00043060-exon-sc0003895-1575043694:8405..9165 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003895 | supercontig | sc0003895:8405..9165 . |
Blast
The following BLAST results are available for this feature:
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