TCONS_00043070 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043070
Unique NameTCONS_00043070
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043070 ID=TCONS_00043070|Name=TCONS_00043070|organism=Clytia hemisphaerica|type=transcript|length=1522bp
AGATAAAAAGTATAGTATGTATTAGATAAAAGGATAATACATAAAGACCA
ATGATACGTGGCATTCTATCCGAATTTGGAGATCAGTGATTCGAACGTGT
GGTTTTATTCCCTGGTTTCCCAGTGTTTCCCATTGGGCAAGTTCACATGC
ATTGGACCTGATTGGACGTTCCAAAAGTAGTTTCGGACACTTTCGGACCC
ATTTTTCTTCGAAACTATTTTCTTCAAGCATGTCAGATGAACCAGATATT
AAAGCAGCAACTAAGACGCTGTTGTTTCATTGATTGTTGCTGATTACAGA
TTTATTGATATACAATCGTTATTTTTCGTGATTATTCATCCTTTTACTGT
GTTGTTTGCTACTTGCTCATTTGTAAAACAAGAAgaggtatgtatttttt
ttggaatataaatttttcagATCGAGTAGAATAGGCCACTAAACGTCTAA
TCCTGACCACCCCTTTCTAATCCAGACCTACctctaaaacaaacaatttt
tccaaatttagatGGTATTTTATATTGGTAAAGTAAAGACAGCATTTTCT
GTAAATTAGAGGTAGGTCAGGACTGGTCAGGATTAGAAAGGAGGGGTGGT
CAGGATTAGACAATCTGACGGTATCAGATTCAAGATTTTTCTGCTATAAA
AATGATTCTGTATTGGAAATCCAGTACTTTCAAAGTCTTTTGTCGTCCAC
CCCCTATAACGGACTACTTAAACTGGAACAGCCCAATGCCCGTTTTCAGA
CAATGtcaatcgaacgccgaatcaatcaaacagaatcgaacgcaatcgaa
tgatgcgattaattcgattgtcgaatacAATTTAattgcaatcgaatatt
acccaggaattaTGCTGTTCGATTATGAGATATAATCGAATCAATTGAGT
AGGTGTGCCGCatttaatttttgtgattttaggtGCGCTTTTTAAATAGA
GGGTGGCTTTAATAGGGGGCGGCGCTTAATAGAGGGCGGCGCTTAATAGA
GGGCGGCGCTTAATAGAGGGAATTCTGTGGTCGCCGCCTTGTCtgatcaa
acgcaatcgaacatcattGTCCATGAATTGAACGAATCAAACGTAATCAA
CagtcaatcgaaccaatcgttAACGCATGTCCCTGGCAACCCCCAGAAAT
TTCCAGGGCAATATGGGGGTAGACATTAATTGCTCGTTTTTCCTCTTGCC
TTTTCTTCCGCTCTACCCCGAAATTGAGCATGACGAAAGAGAGAACGGCC
ACAATCATTGCCTAGTGAAATTTTGGACAGTCAATTTGGCTGTGTTTGAA
TAACATATTCTCTTTTACATCTTAGGGGTCtttgacaaaagattttcaaa
ttttttatcggTATTTTTGGCCGATTAGGGGGGAGGAGTTCCAActacat
accgataaaaaaGCAAGTATTGTGACGAGAATCTTTTTAgcaaatttctt
tctgatttcgtccacaaactccactgaaaTCATGcaatttcacttgcttt
caccttcGCGCACAAATTCGca
Run BLAST on NCBI

transcript from alignment at sc0003901:664..6940+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043070 ID=TCONS_00043070|Name=TCONS_00043070|organism=Clytia hemisphaerica|type=transcript|length=6277bp|location=Sequence derived from alignment at sc0003901:664..6940+ (Clytia hemisphaerica)
AGATAAAAAGTATAGTATGTATTAGATAAAAGGATAATACATAAAGACCA
ATGATACGTGGCATTCTATCCGAATTTGGAGATCAGTGATTCGAACGTGT
GGTTTTATTCCCTGGTTTCCCAGTGTTTCCCATTGGGCAAGTTCACATGC
ATTGGACCTGATTGGACGTTCCAAAAGTAGTTTCGGACACTTTCGGACCC
ATTTTTCTTCGAAACTATTTTCTTCAAGCATGTCAGATGAACCAGATATT
AAAGCAGCAACTAAGGTATGAAATTAAACTAATACAATTAAGGTTCCTAT
TGTgtattgataatttttttaggcTGGTTGTGATGATGATGTATAGCTAT
ATATATCTATATACTCAGCaaagttcttttattttttataaagtgTTATC
AAGCTTTTTttgccttaattttagtcaatTCAAAGTTGTGATGTATGGCT
ACCTTTATGTAAAACTTTCAAGCTGATTTTATTTAGTAATTTGAAGATAA
ATTTTTTGCAtggccagacgatctcaatcgaacggaattggcgatcaaac
cagtcgaaccaaatcgagcgcaatcgactgattgaaattcaattgtcgaa
cgcaattgaatctcaatcgaattttttgcagagagatgcatcttcgcaat
gctcaaaacatggccaagttcaattttagagaaatttttttttgcagatt
ttcattggatttttttcgtTAATTATgcctttttttttttctaaataaaa
cattatttataagaatgtccaccattaagcatggttcaattttcaatgaa
actgattttggtacagggaACTTTccggtttgtgtaaaccgcaggttaca
ggtcacaggttacaggttacaggtcggtgatgacaggttgactctaatca
atgtcattgcagaggaaaatgtttggaaaacacaaagaattatcaaaaac
ataattctcaagcaatttcatccatataaaaaNNNNNNNNNNNNNNNNNN
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NNNNNNNNttaaaataataactgaataattaattagttccatccttctaa
aaccactctcttagggaccttgcaagcttctgtttggtgccattttttat
ccattcacaccatctaCATCACATTTTgcatgataaatatttttcgtgct
tttgtcttgttaggcatcatgcTTTATGAGGCCGaccctaaaaaaaaaaa
agtttccggtccaccggccgggtgaaattttttttcgttgtcacccggcc
gcatttttttttcataagaaccaatAGATAACAGAGGAaactttcttctt
aaaaaacttTACTCATTTAaactcccagctggcacacaacgttgtttcga
cgtttataTAACGTTAAAAAGGCGTTATAaacattagatggacgttgaaa
caatgttgtgtaccagctgggctGTTACATCGTTCTCGTTGCTATATAAC
ACtcttaaaaaagtttgtttgtttagcATGACAGCATGCTTTCTGGACAT
TACGGATCAAATAAACAGTGTTATGCATTTTAAATgagtgaagaaaattt
ttctttgtctaGGATAGGAGGATTTCTGAACGTTAAAGATCAAATAGATA
GTGTTATGCATATTAAATGAgtgaagaaaatctttctttgtctAGGAGGC
TTTCTGAATGTTAAAGATCAAataagtatatgtaatcacatgataacgag
tgcaattcgaatataattgcatgagtgatttttttgttattaattttccg
agtccgaaaggacgaggaaaatttgaaacaaaaaaatcatgagtgcaatt
ttcgaattgtaccagttattatgtgattacgagctaatcgcacaatgact
gtcactactttttcccagttaggaaagtaaattacagaaattacactgag
agttttatctttttctcttctctttatgtctttcttttagtgttgttttt
gattttcgttctcacaaaataaatttcgaatgcaattaaaacgttcgatg
caaaaaaaatgtaagaaaaaacatttaaatcaattttgtaaacattggcg
cggcattggagagtgtgattaacgattaaatgctctctacaggatgcaat
taacgattaaattgctctctttgagggcgtgccaaataagaaaaaataac
ccatcgtgcgattaataGTGTTATGCAttaaatgagtgaaaaaaaagaac
ttttttctaaaaaatgacgcTTTTTGAAGATgactttttacaaattttct
tcaTGTCTTTTGAATATGTGAAGCAAATTTAAAGAAttatagctcaaaat
ttaagttggcctttcttctttctaacggtgaaaagatttttgtaacagtt
tctaatttttttgattagaaatcatgaaaaggaccaaaaaaaaatttttc
ccggcCGCCcgcatgactttttttttcgtcacccggtggaccggaaacca
aaaaatttttagggtcggcctgattttgtcattatttttgtaagtaaatg
tcactaggttgttattctatacaattgtcattttataatatctaaataac
atgtattacttttttgtaatttaatgcgttatgtattgatgttatgttat
gtatatatTATGATCTTAtcatcttttttccggtctgcactttgttgacc
tgtaacctgtaacctgcgaccTGTTACCTGTGGTTTACACAAACcgggaa
ctttctaaaaatcgccagaacagccgagaatcggatctcttgaatttctc
gagttgttcttgtattattctgcattttcatacgattgttgtcatttttc
aattgttggCCCAGCGTTAGCGAACGGGCCTTTCAAAAGCAACTGTCTGT
TTGTCCGtcccactttcgctttcgtttttacaAAAACCGTGCTCCTTCTA
AATTTTAGACTAGCAAGCATCCGTATTGCGTATTGTATTCAGTGAAGGGA
GTGACTCtgttcatagtgtcctccccccctggattcagggggggaaagaa
ttttttttgaagccagggtgGGGAAAAACGAGggggggatggaaaatttt
cattctaggcatgggggggggGGCNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNGGGGGggaagagaccctgaaggacactatgcTGTTGCAAGCGG
AGCTGCAGAGTGAAATACAACGATTAGTTACTAGTCTATCTAAGTTATTG
TTGTTGTAGATCTCGCGCTCTTTGCATTTTATAGCTCAAAATGGTGGATT
AAGTgcaactcttttttttttctcctccTGAAATATCAGACCAACTCCAG
ACCAACTCTGACATTTTCAGACGCTGTTGTTTCATTGATTGTTGCTGATT
ACAGATTTATTGATATACAATCGTTATTTTTCGTGATTATTCATCCTTTT
ACTGTGTTGTTTGCTACTTGCTCATTTGTAAAACAAGAAgaggtatgtat
tttttttggaatataaatttttcagATCGAGTAGAATAGGCCACTAAACG
TCTAATCCTGACCACCCCTTTCTAATCCAGACCTACctctaaaacaaaca
atttttccaaatttagatGGTATTTTATATTGGTAAAGTAAAGACAGCAT
TTTCTGTAAATTAGAGGTAGGTCAGGACTGGTCAGGATTAGAAAGGAGGG
GTGGTCAGGATTAGACAATCTGACGGTATCAGATTCAAGATTTTTCTGCT
ATAAAAATGATTCTGTATTGGAAATCCAGTACTTTCAAAGTCTTTTGTCG
TCCACCCCCTATAACGGACTACTTAAACTGGAACAGCCCAATGCCCGTTT
TCAGACAATGtcaatcgaacgccgaatcaatcaaacagaatcgaacgcaa
tcgaatgatgcgattaattcgattgtcgaatacAATTTAattgcaatcga
atattacccaggaattaTGCTGTTCGATTATGAGATATAATCGAATCAAT
TGAGTAGGTGTGCCGCatttaatttttgtgattttaggtGCGCTTTTTAA
ATAGAGGGTGGCTTTAATAGGGGGCGGCGCTTAATAGAGGGCGGCGCTTA
ATAGAGGGCGGCGCTTAATAGAGGGAATTCTGTGGTCGCCGCCTTGTCtg
atcaaacgcaatcgaacatcattGTCCATGAATTGAACGAATCAAACGTA
ATCAACagtcaatcgaaccaatcgttAACGCATGTCCCTGGCAACCCCCA
GAAATTTCCAGGGCAATATGGGGGTAGACATTAATTGCTCGTTTTTCCTC
TTGCCTTTTCTTCCGCTCTACCCCGAAATTGAGCATGACGAAAGAGAGAA
CGGCCACAATCATTGCCTAGTGAAATTTTGGACAGTCAATTTGGCTGTGT
TTGAATAACATATTCTCTTTTACATCTTAGGGGTCtttgacaaaagattt
tcaaattttttatcggTATTTTTGGCCGATTAGGGGGGAGGAGTTCCAAc
tacataccgataaaaaaGCAAGTATTGTGACGAGAATCTTTTTAgcaaat
ttctttctgatttcgtccacaaactccactgaaaTCATGcaatttcactt
gctttcaccttcGCGCACAAATTCGca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026812XLOC_026812Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043070-exon-sc0003901-1491911889:664..928TCONS_00043070-exon-sc0003901-1491911889:664..928Clytia hemisphaericaexon
TCONS_00043070-exon-sc0003901-1510915933:664..928TCONS_00043070-exon-sc0003901-1510915933:664..928Clytia hemisphaericaexon
TCONS_00043070-exon-sc0003901-1575043694:664..928TCONS_00043070-exon-sc0003901-1575043694:664..928Clytia hemisphaericaexon
TCONS_00043070-exon-sc0003901-1491911889:5684..6940TCONS_00043070-exon-sc0003901-1491911889:5684..6940Clytia hemisphaericaexon
TCONS_00043070-exon-sc0003901-1510915933:5684..6940TCONS_00043070-exon-sc0003901-1510915933:5684..6940Clytia hemisphaericaexon
TCONS_00043070-exon-sc0003901-1575043694:5684..6940TCONS_00043070-exon-sc0003901-1575043694:5684..6940Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003901supercontigsc0003901:664..6940 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.30086	0.929857	0.69355	0.473545	1.16165	0.906867	0.815507	1.13524	0.962154	0.982853	1.19044	1.10608	1.19565	1.66796	1.06408	1.20879	0.52977	0.954284	0.517607	0.376619	0.692904	0.665457	1.95773	1.1766	0.990952	0.705983	0.930703	0.29937	1.38412	1.24832
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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