TCONS_00043079 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043079
Unique NameTCONS_00043079
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043079 ID=TCONS_00043079|Name=TCONS_00043079|organism=Clytia hemisphaerica|type=transcript|length=657bp
tgaccaaaacctaCCTCAAACGAATAGAAACGCGGACAATCAGAAAAAGC
GAAACGTCTGGAAGGGGGTAACCGAGCAATGGGAATGAGTATACCTTGTA
TTTTTTATAGTGTTGAAGNCGTCTGGAAGGGGGTAACCGAGCAATGGGAA
TGAGTATACCTTGTATTTTTTATAGTGTTGAAGAGtgaaaagaatgcggc
tattataatttgcatttattttAGCGTTATCAAGAAGAGATTAGAAATCT
TGGTCAAGGATCTGCCCGAATACGACGAGGAGCTACAAGAACTTCTCTCC
GACAAAAAGACAAAGAGACCGGCGTATGTCGACTTATATGAACGCGTCGT
GAAGCAATCGATGATTCAAAGTCGAATGTAGAAAGCATGTGAACAAAGCA
GCCAaaaacactcttttttatacGAAACAGTGAACAGTTCGAgaacaaaa
aataacttttcCACAATGTACTTTTGCTCTTTGGGTGACGCCGGGTGACG
CCGGGTGGACAACATTATTAAAAACGATTCTTAGTTTATTGTActcttat
tttttataagcataatgtTTACCATTAATTAATTCTTCTCTGCATTGAGT
TAGACAACTACTGTTTCCACTTAAACACCTTAAAACAGTGACCTTAAATG
TAAAACG
Run BLAST on NCBI

transcript from alignment at sc0003903:8369..9025

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043079 ID=TCONS_00043079|Name=TCONS_00043079|organism=Clytia hemisphaerica|type=transcript|length=657bp|location=Sequence derived from alignment at sc0003903:8369..9025 (Clytia hemisphaerica)
CGTTTTACATTTAAGGTCACTGTTTTAAGGTGTTTAAGTGGAAACAGTAG
TTGTCTAACTCAATGCAGAGAAGAATTAATTAATGGTAAacattatgctt
ataaaaaataagagTACAATAAACTAAGAATCGTTTTTAATAATGTTGTC
CACCCGGCGTCACCCGGCGTCACCCAAAGAGCAAAAGTACATTGTGgaaa
agttattttttgttcTCGAACTGTTCACTGTTTCgtataaaaaagagtgt
tttTGGCTGCTTTGTTCACATGCTTTCTACATTCGACTTTGAATCATCGA
TTGCTTCACGACGCGTTCATATAAGTCGACATACGCCGGTCTCTTTGTCT
TTTTGTCGGAGAGAAGTTCTTGTAGCTCCTCGTCGTATTCGGGCAGATCC
TTGACCAAGATTTCTAATCTCTTCTTGATAACGCTaaaataaatgcaaat
tataatagccgcattcttttcaCTCTTCAACACTATAAAAAATACAAGGT
ATACTCATTCCCATTGCTCGGTTACCCCCTTCCAGACGNCTTCAACACTA
TAAAAAATACAAGGTATACTCATTCCCATTGCTCGGTTACCCCCTTCCAG
ACGTTTCGCTTTTTCTGATTGTCCGCGTTTCTATTCGTTTGAGGtaggtt
ttggtca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026821XLOC_026821Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043079-exon-sc0003903-1491911889:8369..9025TCONS_00043079-exon-sc0003903-1491911889:8369..9025Clytia hemisphaericaexon
TCONS_00043079-exon-sc0003903-1510915933:8369..9025TCONS_00043079-exon-sc0003903-1510915933:8369..9025Clytia hemisphaericaexon
TCONS_00043079-exon-sc0003903-1575043694:8369..9025TCONS_00043079-exon-sc0003903-1575043694:8369..9025Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003903supercontigsc0003903:8369..9025 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.175446	1.66108	1.18146	1.78157	2.66885	1.29482	1.81851	2.58277	0.921153	1.61261	1.91436	0.30608	0.575435	0.356692	0.182799	0.336729	0.264272	0	0	0	0.330199	2.00571	3.46661	0.217174	0.115887	0.0878963	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043079 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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