TCONS_00043084 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043084
Unique NameTCONS_00043084
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length824

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043084 ID=TCONS_00043084|Name=TCONS_00043084|organism=Clytia hemisphaerica|type=transcript|length=824bp
ttttaatatcttttcaaatcctttttttttaatttttaaaagaaaaatac
acacgcttttttaaaataagaatatcagggtgaaaatttcttccggaAAG
AGCccaatttgataagaatacagttaCAGTCACTTGTATTTGGTCAACTT
TGatgtagaaataaaaaaacgtgtatgctaacataaaaaacatatcaaaa
gttatatacaaaaaataccaaaatgtaGTATCCAgacaaaaaattcagaa
attttataGCACACTGAAAATTGTAAATCCCATCTTGAATCTTTCCAGAA
TTAACCAATTTCATGTTGCAAAAGTCAGCACTTTTACCCCCTGCTGTGAA
AGGTCAACTTATAAAAACCTCACTCGATAATTTTACTCTTTTCAGGTTCT
GACGATGGGCCACTCGTAACCATCATTTTTACAGAGCCAGAGGCTGATGG
CAACCACCTTACGTTGACTCTTCCGTACAACAAATTCAAGCCTTTGGACG
AAAAGGGTCAAAGTATCCCAATGTCAGGGATAAAAGTTGGTCGACGTGGT
TTTTTCTGGTATCCACATCACAAGAAATACTACGAAGCTTGCGTGACAGC
TGTTGCCAAAAAACGAAAAGGTAATTGTTCAGTCCAATAATTTTGATTGA
TATTTGTGACTACcattatacttttgaatccaAGACGGTGCTAATGGACC
AGATAAACTTCCATCtcttctttgtattttcatcttcaatcaaAGCCTCA
GCACCTGTCAAGAGATAAATTCGTCATTCGTTTAATTAAAAGTGACATCT
TAACTGCTAAGGACTTAACTTTAA
Run BLAST on NCBI

transcript from alignment at sc0003905:6733..8743-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043084 ID=TCONS_00043084|Name=TCONS_00043084|organism=Clytia hemisphaerica|type=transcript|length=2011bp|location=Sequence derived from alignment at sc0003905:6733..8743- (Clytia hemisphaerica)
TTTTAATATCTTTTCAAATCCTTTTTTTTTAATTTTTAAAAGAAAAATAC
ACACGCTTTTTTAAAATAAGAATATCAGGGTGAAAATTTCTTCCGGAAAG
AGCCCAATTTGATAAGAATACAGTTACAGTCACTTGTATTTGGTCAACTT
TGATGTAGAAATAAAAAAACGTGTATGCTAACATAAAAAACATATCAAAA
GTTATATACAAAAAATACCAAAATGTAGTATCCAGACAAAAAATTCAGAA
ATTTTATAGCACACTGAAAATTGTAAATCCCATCTTGAATCTTTCCAGAA
TTAACCAATTTCATGTTGCAAAAGTCAGCACTTTTACCCCCTGCTGTGAA
AGGTCAACTTATAAAAACCTCACTCGATAATTTTACTCTTTTCAGGTTCT
GACGATGGGCCACTCGTAACCATCATTTTTACAGAGCCAGAGGCTGATGG
CAACCACCTTACGTTGACTCTTCCGTACAACAAATTCAAGCCTTTGGACG
AAAAGGGTCAAAGTATCCCAATGTCAGGGATAAAAGTTGGTCGACGTGGT
TTTTTCTGGTATCCACATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCAATGTCAGGGATAAAAGTTGGTCGACGTGGTTTTTTCTGGTATC
CACATCACAAGAAATACTACGAAGCTTGCGTGACAGCTGTTGCCAAAAAA
CGAAAAGGTAATTGTTCAGTCCAATAATTTTGATTGATATTTGTGACTAC
CATTATACTTTTGAATCCAAGACGGTGCTAATGGACCAGATAAACTTCCA
TCTCTTCTTTGTATTTTCATCTTCAATCAAAGCCTCAGCACCTGTCAAGA
GATAAATTCGTCATTCGTTTAATTAAAAGTGACATCTTAACTGCTAAGGA
CTTAACTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026823XLOC_026823Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043084-exon-sc0003905-1575043694:8178..8743TCONS_00043084-exon-sc0003905-1575043694:8178..8743Clytia hemisphaericaexon
TCONS_00043084-exon-sc0003905-1575043694:6733..6990TCONS_00043084-exon-sc0003905-1575043694:6733..6990Clytia hemisphaericaexon
TCONS_00043084-exon-sc0003905-1510915933:8178..8743TCONS_00043084-exon-sc0003905-1510915933:8178..8743Clytia hemisphaericaexon
TCONS_00043084-exon-sc0003905-1510915933:6733..6990TCONS_00043084-exon-sc0003905-1510915933:6733..6990Clytia hemisphaericaexon
TCONS_00043084-exon-sc0003905-1491911889:8178..8743TCONS_00043084-exon-sc0003905-1491911889:8178..8743Clytia hemisphaericaexon
TCONS_00043084-exon-sc0003905-1491911889:6733..6990TCONS_00043084-exon-sc0003905-1491911889:6733..6990Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003905supercontigsc0003905:6733..8743 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	17.8879	16.1517	5.50155	6.18201	5.15161	7.98812	4.62832	2.63484	2.55355	6.10129	0	0.0413579	0.380365	0	0.183969	0	0.193737	0	0	0	0.0893039	1.22017	0	0	0.217341	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043084 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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