TCONS_00043128 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043128
Unique NameTCONS_00043128
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length461

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043128 ID=TCONS_00043128|Name=TCONS_00043128|organism=Clytia hemisphaerica|type=transcript|length=461bp
NNAGAACCAATAACAATAGACTTACAAACACCTTTTACATTTCGCTGAGC
TGTAAAAGCAAAACTTCCTATACATGCGCGATAGGCTTCGATGGATATCA
TATTGCAGAATATGTATAATTTACTATTTAAGACCAGCTAGAGGTGAGTA
GAATAGTATGTACTGGCGGCAAGATATAGAATACAGATTATGTGAAGGTT
TGTACAAGGTTTATTATAGCGTGCGGATTATCCTTCGCACAAGGTTTTAT
AGCGTGCGGATTACCCTTCGCACAAGATTTGTTTGTAATCAATGTATTAT
TTGTTTGTTCAATAGTGTATAATTTGTTTCAATAGCTTTGCTTTGGTGCA
GATATTAGCACTAAGTTGCGGATATTTAATCCGCAGTTCCTGCTTTGACA
CAGGGAAGACCTTCACTATAGAAAATAGCTAAGAATCTTTGAATGACTGC
TTGTTCTAANN
Run BLAST on NCBI

transcript from alignment at sc0003941:765..1257+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043128 ID=TCONS_00043128|Name=TCONS_00043128|organism=Clytia hemisphaerica|type=transcript|length=493bp|location=Sequence derived from alignment at sc0003941:765..1257+ (Clytia hemisphaerica)
NNAGAACCAATAACAATAGACTTACAAACACCTTTTACATTTCGCTGAGC
TGTAAAAGCAAAACTTCCTATACATGCGCGATAGGCTTCGATGGATATCA
TATTGCAGAATATGTATAATTTACTATTTAAGACCAGCTAGAGGTGAGTA
GAATAGTATGTACTGGCGGCAAGATATAGAATACAGATTATGTGAAGGTT
TGTACAAGGTTTATTATAGCGTGCGGATTATCCTTCGCACAAGGTTTTTA
GCGTGCGGATTACCCTTCGCACAAGGTTTTATAGCGTGCGGATTACCCTT
CGCACAAGATTTGTTTGTAATCAATGTATTATTTGTTTGTTCAATAGTGT
ATAATTTGTTTCAATAGCTTTGCTTTGGTGCAGATATTAGCACTAAGTTG
CGGATATTTAATCCGCAGTTCCTGCTTTGACACAGGGAAGACCTTCACTA
TAGAAAATAGCTAAGAATCTTTGAATGACTGCTTGTTCTAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026857XLOC_026857Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043128-exon-sc0003941-1491911889:765..1007TCONS_00043128-exon-sc0003941-1491911889:765..1007Clytia hemisphaericaexon
TCONS_00043128-exon-sc0003941-1510915933:765..1007TCONS_00043128-exon-sc0003941-1510915933:765..1007Clytia hemisphaericaexon
TCONS_00043128-exon-sc0003941-1575043694:765..1007TCONS_00043128-exon-sc0003941-1575043694:765..1007Clytia hemisphaericaexon
TCONS_00043128-exon-sc0003941-1491911889:1040..1257TCONS_00043128-exon-sc0003941-1491911889:1040..1257Clytia hemisphaericaexon
TCONS_00043128-exon-sc0003941-1510915933:1040..1257TCONS_00043128-exon-sc0003941-1510915933:1040..1257Clytia hemisphaericaexon
TCONS_00043128-exon-sc0003941-1575043694:1040..1257TCONS_00043128-exon-sc0003941-1575043694:1040..1257Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003941supercontigsc0003941:765..1257 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.50468	0.992923	2.07886	0.927548	0.94928	0.750134	0.181001	1.18616	1.17057	0.893702	2.81584	2.27372	0.80029	0.922728	1.50576	0.46431	0	0.286608	0.598629	0.884308	1.61392	2.2968	0	0.16456	0.151154	0.944311	1.37637	1.93798	0.999207	2.53787
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top