TCONS_00043130 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043130
Unique NameTCONS_00043130
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043130 ID=TCONS_00043130|Name=TCONS_00043130|organism=Clytia hemisphaerica|type=transcript|length=634bp
AGCTGAACTATTCAGCTTAACAACAGATGCATTTACAAATGTAAGCCACA
AAATGGTTTCACTCTATAAGCAAAGTTGTGGCTGACtgtaaaaatgtcac
aaaacaggggttAATTTTTGATTAGCATCCTCCGCCCTCTGGCTGGATTA
TTTACATTAACGAAGAAATCGTGCACGACTAGATGTCCAAGTGGATTCTT
GTATCACAACAGATCAACTTTAGATTAACCTATAACTGGTAGAATCAGTG
AGGAAATATACTAGGATGATCTATACATTGAAAATATGGTTTTTGTTGTG
AAAACACATTtaaattgacttaaatcaatGTTGACGTGGAGTTTGGCGCA
AAATTTTAGGATTGGCGCACATCACGTGAAAGTGATAATTTGGTATTTCT
GgactattttgatatttcaaagccttttttaaagtatataaagtagAACT
ATAGTCCATTTTAGTCAAACAGcgaaagaattttgtaaaacggtcgaTTT
ATTACAGAGAAATAGAGGATATATATCTACTTCTGAATTTGCGGTccgtt
ttctcaaaataggtttcagggggttttcgcacaccttggcaacgttttct
caggattgacaagtgctatgaacttgaaattttc
Run BLAST on NCBI

transcript from alignment at sc0003943:6384..7017

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043130 ID=TCONS_00043130|Name=TCONS_00043130|organism=Clytia hemisphaerica|type=transcript|length=634bp|location=Sequence derived from alignment at sc0003943:6384..7017 (Clytia hemisphaerica)
gaaaatttcaagttcatagcacttgtcaatcctgagaaaacgttgccaag
gtgtgcgaaaaccccctgaaacctattttgagaaaacggACCGCAAATTC
AGAAGTAGATATATATCCTCTATTTCTCTGTAATAAAtcgaccgttttac
aaaattctttcgCTGTTTGACTAAAATGGACTATAGTTctactttatata
ctttaaaaaaggctttgaaatatcaaaatagtcCAGAAATACCAAATTAT
CACTTTCACGTGATGTGCGCCAATCCTAAAATTTTGCGCCAAACTCCACG
TCAACattgatttaagtcaatttaAATGTGTTTTCACAACAAAAACCATA
TTTTCAATGTATAGATCATCCTAGTATATTTCCTCACTGATTCTACCAGT
TATAGGTTAATCTAAAGTTGATCTGTTGTGATACAAGAATCCACTTGGAC
ATCTAGTCGTGCACGATTTCTTCGTTAATGTAAATAATCCAGCCAGAGGG
CGGAGGATGCTAATCAAAAATTaacccctgttttgtgacatttttacaGT
CAGCCACAACTTTGCTTATAGAGTGAAACCATTTTGTGGCTTACATTTGT
AAATGCATCTGTTGTTAAGCTGAATAGTTCAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026859XLOC_026859Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043130-exon-sc0003943-1491911889:6384..7017TCONS_00043130-exon-sc0003943-1491911889:6384..7017Clytia hemisphaericaexon
TCONS_00043130-exon-sc0003943-1510915933:6384..7017TCONS_00043130-exon-sc0003943-1510915933:6384..7017Clytia hemisphaericaexon
TCONS_00043130-exon-sc0003943-1575043694:6384..7017TCONS_00043130-exon-sc0003943-1575043694:6384..7017Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003943supercontigsc0003943:6384..7017 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.48443	3.08799	0.93665	1.48257	7.07575	5.00205	10.0246	6.89636	5.89402	10.2936	10.3249	5.87753	4.91483	6.74155	3.60049	3.79683	3.87207	4.88032	9.5765	8.06624	7.09669	6.84686	4.99136	4.76083	3.71226	4.39427	23.5849	16.6121	17.6236	13.6505
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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