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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043141 ID=TCONS_00043141|Name=TCONS_00043141|organism=Clytia hemisphaerica|type=transcript|length=2303bp
gaaaaacctatttttttaagtttatatatatggcagaggtatataattgt
tacattctaatcctacttttttccaaggatcattttgagcctaatttgat
ggctgtagcaccaacacagcaggttttagattttttttccaagcaaaatg
gcCCGAAAATGGCCCATTTTAGGCATAAAAAAGGGCGGAGAACcgccatt
ttttggaaatatccaaaaatatcttagatttatgttatttgggtcccaac
ctaccaaaaaaaattatgcaaacttaattttgaaaaaaaagtcaggggcc
tctggaaatggaggaataaaaaataataagtaaagaataagtttttctga
aaggagaaaccccaaatgaaaaaaaaatccattttggcagaaatataaac
tttttttttgggacattcccattataaagaagcaaaaaagtgaaaaaaaa
cgacatgaaaatgaaagaactaaaattagtgattgtgatttttgaattcc
tcaggccctttttctgataaacatacaaagtttcagccttcaactacatt
ttcctccatttctagaaacatttgttcatcgatagttgcaactttttttc
tcccgttggaaaacaattttgaaaatgttgcaaaaacgtTCGGtacttta
ccaatttgccgtctcgggagtccacagtgttatatcaGTTCGGCAAATTG
CATAGATCCGCAACGTTGCAATATTCCGCAACGTTGGTCTTTTTTCACAG
CGTTTCCCCAGGGTTGCGCTGCTATTTTACGCAACGCTTCCAATTGAAGc
ttgtgattttaaaaattatgagcgcctaccaattttcttctaaacacatg
caaaatcaggcaaaaccttgcttttttgaacaaagtagcatttcttccaa
gaatgattgtgaataatcgctaggtaggaaattaaaatgctagtgtgaaa
agtttccttttgggtTGTTCTTCAGAATGCACATTATTTTGGGACCCCGG
TCCAGGCCATGCGATGCCAGTGTTGGTCTAAAGGCCAGAGCTGCGAAATT
ATGCAGCAGTAAAGCTGCGGAATTTCGCAACGTTGCGGAATATCACAACG
CTAAAGATGCAGAATTTCGCAGCGTTGCGGATCTGTGCAATTTGTCGAAC
TGATATacaggaccctcccggcgctccggaaacgTCCGGAGCAAAAAGTG
CCGTTTTTTTCATCGGAGCATGAAGATTCTGGAGCACTTCCGGTGTTCCG
GAGGTAGATTTTCGGCGATTGGTCTGCACCGGAACGTTCAGGAAAAGATA
TTCGCAATATATTTACGATAGCGCTCGCTGTGCTAATCATGTAAAAACTA
ACTGCACACGGGtgtatttttaaaaagtcaGCCGACTCAAGGAAGTGAAA
CctcacattttttaatttttttgatatttctacAAGTGATGCTTCCAAAT
ATAATGtcacaaattcaatttcattaatggctGATCCATCAtatatatca
atattttgaatattttttgtaaccTTGTTTAAACCGCTTTTTAGAAcgtg
ttaaaaatcacttgctccgGAAGCACCGGAAGAGCTCCGGAACTTTCCCC
TGTCTGGAAATGGTGCACGATACTCCGAATATATTTGGCGTGAGGCTCTA
ATTACTTTTGGCGTATTGGCGTAAGGAGCAGCTACAATGTAAGATATTGG
CGTAAGTCTaaccttttcaaatttttattttcaggataACACACGACGAC
AGAACACAGGAGCACTCCTCGCCATTTTCGATAAGTTTAGCAAACAGCAA
TATTCGATTCATTCTTCTCAGTAATCCGTTGTTCACCAGAAATTCATCCG
ATTATAAATCGTAAGTCTAATACACAATGTTTATTTTGCCAAACAGTGGC
ACATTTTCATTGGCAGTATACGCGGGATTTTTTCTCTTTCAGCTTCTAGC
AAAAAGTCGAACGCAGATGACAAAGCGGAAGAATGACACCACCCGCCTCA
AAAACCACCCATCCGCCCGTAAGATCGCAGTTTACCGTTCGCTTTTATCG
TTTGCCTTTTATCTTTTAGCGCTGGATCATTTGGTCTGTAATTATTCTTT
TAACATTTAAGGAGATCTCATTCATCTCAAAGAAGTCAGACACTTCCTAG
TCCCACAGCTAAAAAGTCCAACGCGACAGGGCAAATGAGGTTTATGCGGA
CTAGCAAGATAGATTGTCCAATTTAGCTTTCTTCCAAACAGTATTTATCA
AATATGAgatatttttcaagatttttcaatCATAAAACCAGGAAAAATAG
TCG Run BLAST on NCBI transcript from alignment at sc0003952:2435..4737 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043141 ID=TCONS_00043141|Name=TCONS_00043141|organism=Clytia hemisphaerica|type=transcript|length=2303bp|location=Sequence derived from alignment at sc0003952:2435..4737 (Clytia hemisphaerica)
CGACTATTTTTCCTGGTTTTATGattgaaaaatcttgaaaaatatcTCAT
ATTTGATAAATACTGTTTGGAAGAAAGCTAAATTGGACAATCTATCTTGC
TAGTCCGCATAAACCTCATTTGCCCTGTCGCGTTGGACTTTTTAGCTGTG
GGACTAGGAAGTGTCTGACTTCTTTGAGATGAATGAGATCTCCTTAAATG
TTAAAAGAATAATTACAGACCAAATGATCCAGCGCTAAAAGATAAAAGGC
AAACGATAAAAGCGAACGGTAAACTGCGATCTTACGGGCGGATGGGTGGT
TTTTGAGGCGGGTGGTGTCATTCTTCCGCTTTGTCATCTGCGTTCGACTT
TTTGCTAGAAGCTGAAAGAGAAAAAATCCCGCGTATACTGCCAATGAAAA
TGTGCCACTGTTTGGCAAAATAAACATTGTGTATTAGACTTACGATTTAT
AATCGGATGAATTTCTGGTGAACAACGGATTACTGAGAAGAATGAATCGA
ATATTGCTGTTTGCTAAACTTATCGAAAATGGCGAGGAGTGCTCCTGTGT
TCTGTCGTCGTGTGTtatcctgaaaataaaaatttgaaaaggttAGACTT
ACGCCAATATCTTACATTGTAGCTGCTCCTTACGCCAATACGCCAAAAGT
AATTAGAGCCTCACGCCAAATATATTCGGAGTATCGTGCACCATTTCCAG
ACAGGGGAAAGTTCCGGAGCTCTTCCGGTGCTTCcggagcaagtgatttt
taacacgTTCTAAAAAGCGGTTTAAACAAggttacaaaaaatattcaaaa
tattgatatataTGATGGATCagccattaatgaaattgaatttgtgaCAT
TATATTTGGAAGCATCACTTgtagaaatatcaaaaaaattaaaaaatgtg
agGTTTCACTTCCTTGAGTCGGCtgactttttaaaaatacaCCCGTGTGC
AGTTAGTTTTTACATGATTAGCACAGCGAGCGCTATCGTAAATATATTGC
GAATATCTTTTCCTGAACGTTCCGGTGCAGACCAATCGCCGAAAATCTAC
CTCCGGAACACCGGAAGTGCTCCAGAATCTTCATGCTCCGATGAAAAAAA
CGGCACTTTTTGCTCCGGAcgtttccggagcgccgggagggtcctgtATA
TCAGTTCGACAAATTGCACAGATCCGCAACGCTGCGAAATTCTGCATCTT
TAGCGTTGTGATATTCCGCAACGTTGCGAAATTCCGCAGCTTTACTGCTG
CATAATTTCGCAGCTCTGGCCTTTAGACCAACACTGGCATCGCATGGCCT
GGACCGGGGTCCCAAAATAATGTGCATTCTGAAGAACAacccaaaaggaa
acttttcacactagcattttaatttcctacctagcgattattcacaatca
ttcttggaagaaatgctactttgttcaaaaaagcaaggttttgcctgatt
ttgcatgtgtttagaagaaaattggtaggcgctcataatttttaaaatca
caagCTTCAATTGGAAGCGTTGCGTAAAATAGCAGCGCAACCCTGGGGAA
ACGCTGTGAAAAAAGACCAACGTTGCGGAATATTGCAACGTTGCGGATCT
ATGCAATTTGCCGAACtgatataacactgtggactcccgagacggcaaat
tggtaaagtaCCGAacgtttttgcaacattttcaaaattgttttccaacg
ggagaaaaaaagttgcaactatcgatgaacaaatgtttctagaaatggag
gaaaatgtagttgaaggctgaaactttgtatgtttatcagaaaaagggcc
tgaggaattcaaaaatcacaatcactaattttagttctttcattttcatg
tcgttttttttcacttttttgcttctttataatgggaatgtcccaaaaaa
aaagtttatatttctgccaaaatggatttttttttcatttggggtttctc
ctttcagaaaaacttattctttacttattattttttattcctccatttcc
agaggcccctgacttttttttcaaaattaagtttgcataattttttttgg
taggttgggacccaaataacataaatctaagatatttttggatatttcca
aaaaatggcgGTTCTCCGCCCTTTTTTATGCCTAAAATGGGCCATTTTCG
Ggccattttgcttggaaaaaaaatctaaaacctgctgtgttggtgctaca
gccatcaaattaggctcaaaatgatccttggaaaaaagtaggattagaat
gtaacaattatatacctctgccatatatataaacttaaaaaaataggttt
ttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043141-exon-sc0003952-1491911889:2435..4737 | TCONS_00043141-exon-sc0003952-1491911889:2435..4737 | Clytia hemisphaerica | exon |
| TCONS_00043141-exon-sc0003952-1510915933:2435..4737 | TCONS_00043141-exon-sc0003952-1510915933:2435..4737 | Clytia hemisphaerica | exon |
| TCONS_00043141-exon-sc0003952-1575043694:2435..4737 | TCONS_00043141-exon-sc0003952-1575043694:2435..4737 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003952 | supercontig | sc0003952:2435..4737 . |
Blast
The following BLAST results are available for this feature:
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