TCONS_00043149 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043149
Unique NameTCONS_00043149
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043149 ID=TCONS_00043149|Name=TCONS_00043149|organism=Clytia hemisphaerica|type=transcript|length=457bp
NATACCACCGACCCTTGCACCGGAGCCAGCCAAAACCTGCAAGCCTCATA
CATGCCAGATTGCAAGCAACAGGTGAAAGACACTCACGGCTGGTACAAAG
GAAAAAGATGGTGTCCAGACACAATGTCCCAACCGTACAGTGAATGGCTA
GCTGAGCAAAAAGAGAAGGAAAATGCTGCAAAACAACAGTGACTTCGACA
CATTCTTATCGAACTACAATCTTTTAGCGACGTTATGAACGTTTGGAGTA
ATTAAAACGTATATGTCGTGGTTGGNTAGCGACATTATGAACGTTTGGAG
TAATTGAAACGTATATGTCGTGGTTGGCTTGCTTGTCGGATTATATCTGA
CGTTCTTTCgttctttttattgattattgattttttcaaaagagaCACTT
TTTCCATGTCAAATGTTTTGCAAGATAGGAGAGACTTTTTAATTCTGTAA
GTCGGGC
Run BLAST on NCBI

transcript from alignment at sc0003957:5021..5477

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043149 ID=TCONS_00043149|Name=TCONS_00043149|organism=Clytia hemisphaerica|type=transcript|length=457bp|location=Sequence derived from alignment at sc0003957:5021..5477 (Clytia hemisphaerica)
GCCCGACTTACAGAATTAAAAAGTCTCTCCTATCTTGCAAAACATTTGAC
ATGGAAAAAGTGtctcttttgaaaaaatcaataatcaataaaaagaacGA
AAGAACGTCAGATATAATCCGACAAGCAAGCCAACCACGACATATACGTT
TCAATTACTCCAAACGTTCATAATGTCGCTANCCAACCACGACATATACG
TTTTAATTACTCCAAACGTTCATAACGTCGCTAAAAGATTGTAGTTCGAT
AAGAATGTGTCGAAGTCACTGTTGTTTTGCAGCATTTTCCTTCTCTTTTT
GCTCAGCTAGCCATTCACTGTACGGTTGGGACATTGTGTCTGGACACCAT
CTTTTTCCTTTGTACCAGCCGTGAGTGTCTTTCACCTGTTGCTTGCAATC
TGGCATGTATGAGGCTTGCAGGTTTTGGCTGGCTCCGGTGCAAGGGTCGG
TGGTATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026872XLOC_026872Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043149-exon-sc0003957-1491911889:5021..5477TCONS_00043149-exon-sc0003957-1491911889:5021..5477Clytia hemisphaericaexon
TCONS_00043149-exon-sc0003957-1510915933:5021..5477TCONS_00043149-exon-sc0003957-1510915933:5021..5477Clytia hemisphaericaexon
TCONS_00043149-exon-sc0003957-1575043694:5021..5477TCONS_00043149-exon-sc0003957-1575043694:5021..5477Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003957supercontigsc0003957:5021..5477 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.7873	0.31939	0.282292	0.158467	0.385836	0	0	0.516552	0.391031	0.149321	0	0.436058	1.25794	0.395222	0	0.174348	0.107391	0.596118	0.456213	0.159131	0.414942	1.21437	0	0.149122	5.07189	4.62908	0	0.209344	0.317561	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043149 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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