TCONS_00043150 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043150
Unique NameTCONS_00043150
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length496

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043150 ID=TCONS_00043150|Name=TCONS_00043150|organism=Clytia hemisphaerica|type=transcript|length=496bp
AGCTGATCAATGAAGACGTCCAAAACCCAACCCTCAGTGCTGTGAAGAAA
GCAATCAACTCAGGAGAAATGGCACGGCATTGTCAACGACGAAATCGGGG
TGCAGAAAAAACAATCGAGATGATAGAGGACCTGATCCTCTCCATGACTG
GTGCCACTGACTCTCTGGGTGTCTCTTTATTCAAAGCAACCATCGTTGAT
GTCTGGGAAGAGCAGAGGCGTCACGTGAAGTGCATCCAAGATCCTGATGG
CTTCCAACTCTACACACAGACAGGTTCACTAGAGAAGGGAGGTGTCAAGC
TGCCAATCTACCGTTGCGCCCGCGGCAGCACTTCGCTAGACTATTTCCAC
CACCATCTACGCAACTTCATACCGGGCACTTGTGCCAATGCTGTCAACTT
TCAAGCATATCTCCTCGATGGACTTGCTCGGTGGAACACCTTGAGAAGAA
ATGCTATCGATGGAACTAAGGATGAGATGCGTTGCTTTGACTCCAA
Run BLAST on NCBI

protein sequence of TCONS_00043150-protein

>TCONS_00043150-protein ID=TCONS_00043150-protein|Name=TCONS_00043150-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
LINEDVQNPTLSAVKKAINSGEMARHCQRRNRGAEKTIEMIEDLILSMTG
ATDSLGVSLFKATIVDVWEEQRRHVKCIQDPDGFQLYTQTGSLEKGGVKL
PIYRCARGSTSLDYFHHHLRNFIPGTCANAVNFQAYLLDGLARWNTLRRN
AIDGTKDEMRCFDS
Run BLAST on NCBI

transcript from alignment at sc0003957:8355..8850

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043150 ID=TCONS_00043150|Name=TCONS_00043150|organism=Clytia hemisphaerica|type=transcript|length=496bp|location=Sequence derived from alignment at sc0003957:8355..8850 (Clytia hemisphaerica)
TTGGAGTCAAAGCAACGCATCTCATCCTTAGTTCCATCGATAGCATTTCT
TCTCAAGGTGTTCCACCGAGCAAGTCCATCGAGGAGATATGCTTGAAAGT
TGACAGCATTGGCACAAGTGCCCGGTATGAAGTTGCGTAGATGGTGGTGG
AAATAGTCTAGCGAAGTGCTGCCGCGGGCGCAACGGTAGATTGGCAGCTT
GACACCTCCCTTCTCTAGTGAACCTGTCTGTGTGTAGAGTTGGAAGCCAT
CAGGATCTTGGATGCACTTCACGTGACGCCTCTGCTCTTCCCAGACATCA
ACGATGGTTGCTTTGAATAAAGAGACACCCAGAGAGTCAGTGGCACCAGT
CATGGAGAGGATCAGGTCCTCTATCATCTCGATTGTTTTTTCTGCACCCC
GATTTCGTCGTTGACAATGCCGTGCCATTTCTCCTGAGTTGATTGCTTTC
TTCACAGCACTGAGGGTTGGGTTTTGGACGTCTTCATTGATCAGCT

Coding sequence (CDS) from alignment at sc0003957:8355..8850

>TCONS_00043150 ID=TCONS_00043150|Name=TCONS_00043150|organism=Clytia hemisphaerica|type=CDS|length=492bp|location=Sequence derived from alignment at sc0003957:8355..8850 (Clytia hemisphaerica)
GGAGTCAAAGCAACGCATCTCATCCTTAGTTCCATCGATAGCATTTCTTC
TCAAGGTGTTCCACCGAGCAAGTCCATCGAGGAGATATGCTTGAAAGTTG
ACAGCATTGGCACAAGTGCCCGGTATGAAGTTGCGTAGATGGTGGTGGAA
ATAGTCTAGCGAAGTGCTGCCGCGGGCGCAACGGTAGATTGGCAGCTTGA
CACCTCCCTTCTCTAGTGAACCTGTCTGTGTGTAGAGTTGGAAGCCATCA
GGATCTTGGATGCACTTCACGTGACGCCTCTGCTCTTCCCAGACATCAAC
GATGGTTGCTTTGAATAAAGAGACACCCAGAGAGTCAGTGGCACCAGTCA
TGGAGAGGATCAGGTCCTCTATCATCTCGATTGTTTTTTCTGCACCCCGA
TTTCGTCGTTGACAATGCCGTGCCATTTCTCCTGAGTTGATTGCTTTCTT
CACAGCACTGAGGGTTGGGTTTTGGACGTCTTCATTGATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026873XLOC_026873Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043150-proteinTCONS_00043150-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043150-exon-sc0003957-1491911889:8355..8850TCONS_00043150-exon-sc0003957-1491911889:8355..8850Clytia hemisphaericaexon
TCONS_00043150-exon-sc0003957-1510915933:8355..8850TCONS_00043150-exon-sc0003957-1510915933:8355..8850Clytia hemisphaericaexon
TCONS_00043150-exon-sc0003957-1575043694:8355..8850TCONS_00043150-exon-sc0003957-1575043694:8355..8850Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003957supercontigsc0003957:8355..8850 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.834081	0	0	0	0.556632	0.257343	0	0.319586	0.399577	0.413893	1.22957	0.152882	0.479794	0.640879	0.192504	0	0.0927979	0.285345	0	0	0	0.454799	0.0281753	0	2.16552	3.34875	0	0	0.0512268	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043150 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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