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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043161 ID=TCONS_00043161|Name=TCONS_00043161|organism=Clytia hemisphaerica|type=transcript|length=1542bp
CGATTGTGTATATGCTTTATTTGGTTTGTTCTATAACTTGAGCTACTTta
tcttaaattttttatttttttttattattgctGCTTTAGACTTTTCATTT
GTGCGTGTAAACGTTATTCTGCCCCTGAGGCAGTCATTCCTTTAGTTTAT
tattattacgaaaacgttccgtaatattttaaaagtttcctgtaatattt
ttaaaggattttatacTGATGAGTGGCGTAGAAAGCTCCCAtttatgagc
tcttttcacTCTCAGGTTTTTATTCACTGTAAATAGTACTACAAAAAGCG
AAAGAGAACTTAANNCCTGTAAtatttttaaaggattttatacTGATGAG
TGGCGTAGAAAGCTCCCAtttatgagctcttttcacTCTCAGGTTTTTAT
TCACTGTAAATAGTACTACAAAAAGCGAAAGAGAACTTAAACTTaaaact
taaacttaaacttaaacttaaacttaaaaATTCCCGCCCATTATCCGCCA
CTTGCAAACATTGTAAAACCGAAGTCAAAACACGAGGGAAAAGATTCAGT
CGCCATCTTGGAAGGAAGCCATGATAAATAATCTTGACAAGCAACAACTT
TAAAAGGTTGGGATGCTCAAGAGAAAACTCACTATAATGGATTCTACTTT
CAGGCAGAAAGAACTAATGgaaaaattATATGGTTGACCCTTTCCTCAAG
ACACCTTATACTATGAAATGACGCATGATTATCCTtatcgagcctctcct
ggattTCTAAGTCACAGTTTTGTTCTCAAGAGATACTGGACACAAtcatg
aaaatgaaacaaacaCCCTTTGGAAATCAATAAACTATGAGATTAACTCA
AAACAGTACACTAAATATCACGAGCAATGATGACAATCACTACATCGAAT
TTAATTGATAATCATCTGGGTTTAATAATGTGTAATTTGAGACACAATTT
GATAGTCGTTTTGGTCAATATGTAGTGAATAGTTCTTGTTTTTATCAATA
ATGTAATGATTTGTCTACATAAGAGCCAGTCTTTTAGATTAGACTAGTAA
AGCCTATGAGATCGAaagatttttggtattttttaggGTTTTACTGTAAG
GATTTTTTTGGGATAAGTTaggtttttggtatttttttggGATTACTGGA
AACTTCTGAGGtttaagattttgtttttttagattttttgggGTTATTTT
GGAAAAGTGAGCAagattttttcgagttatttaccCCTTGATGTAAATTC
ATTAAGTTGTCTGTGTTAGATTATGACATGGTGTCCTATGAGTCATTTGG
TTGCTCAAGTTTAACCACCCCCCATCAGAGTTAGGAAACCTTTTTTATTG
CCCCCATaccttttcaaaaacattaccGAAATCTaagttgattttcaaaa
aggtttttctcCCTTTTGGCACTAAATGGACTTTAATACTCATTATTTCG
ATACTTTGTAATCCGTTTATGATTTACATAGTatactaaaaagaaaattt
caagcaattgTAATTTactttttccgatttttttaatGGCAG Run BLAST on NCBI transcript from alignment at sc0003968:13424..17276+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043161 ID=TCONS_00043161|Name=TCONS_00043161|organism=Clytia hemisphaerica|type=transcript|length=3853bp|location=Sequence derived from alignment at sc0003968:13424..17276+ (Clytia hemisphaerica)
CGATTGTGTATATGCTTTATTTGGTTTGTTCTATAACTTGAGCTACTTta
tcttaaattttttatttttttttattattgctGCTTTAGACTTTTCATTT
GTGCGTGTAAACGTTATTCTGCCCCTGAGGCAGTCATTCCTTTAGTTTAT
tattattacgaaaacgttccgtaatattttaaaagtttcctgtaatattt
ttaaaggattttatacTGATGAGTGGCGTAGAAAGCTCCCAtttatgagc
tcttttcacTCTCAGGTTTTTATTCACTGTAAATAGTACTACAAAAAGCG
AAAGAGAACTTAANNCCTGTAAtatttttaaaggattttatacTGATGAG
TGGCGTAGAAAGCTCCCAtttatgagctcttttcacTCTCAGGTTTTTAT
TCACTGTAAATAGTACTACAAAAAGCGAAAGAGAACTTAAACTTaaaact
taaacttaaacttaaacttaaacttaaaaATTCCCGCCCATTATCCGCCA
CTTGCAAACATTGTAAAACCGAAGTCAAAACACGAGGGAAAAGATTCAGT
CGCCATCTTGGAAGGAAGCCATGATAAATAATCTTGACAAGCAACAACTT
TAAAAGGCAAGTATATGTaatggttttttttcttttgcttttattgttct
aaggtaGGATTTTTGCTTTGAGATGCTTTCAGTCATGAAGAGTTTTTCAC
AGATNttttttttttcttttgcttttattgttctaaggtaGGTTTTTTGC
TTTGAGATGCTTTCAGTCATGAAGAGTTTTTCACAGATTtgtctgtttgt
ttttgttttaaaagctATGTCAAATGTAGCTAAGAAAAGCCCCAAAAAAA
TCAGTCTCTGTTCTAATGAGGTGCACAGGCCAGCTCTGGTCTTTATTTGT
ATTTGGGGGAagggaaatgaaatttttcattttttccacttcttaaattt
ggaaaatatccTTTCTTGCAAACAATACTGACCGTGTTTTATGGGAAGTA
TTTGCTTATCTCTGACCGTGGTTATGGTAAGAGATGAAAGGTTCAACATG
ATTCTCTTTTATCAgaagttaaagaaaaattatgaacttttaCTCAAAAT
GTTTAAATATATTTAGTTAAAAGGAAagtcaaattaatttttatcattgt
tgATCTTTCATGCATATAATACTGACCGTGTTTTATGGGAAGTACTTGCT
TATCTCTGACCGTGGTTATGGTAAGAGATGAAAGGTTCAACATGATTCTC
TTTTATCAGAAGTTTAAAGAcaaatgatgaacttttagtcaaaatattta
aatatatttaGTTGAGAGGAAAGTCAAATTaatttctatcattgttgatC
TTTCATGCATATAATACTGACCGTGTTTTATGGGAAGTACTTGCTTATCT
CTGACCGTGGTTATGGTAAGAGATGAAAGGTTCAACATGATTCTCTTTTA
TCAGAAGTTTAAAGAcaaatgatgaacttttagtcaaaatatttaaatat
attaTAGTTAAGAGGAAAGTCAAATTGatttctatcattgttgatCTCTC
ATGCATATAATACTGACCGTGTTTTATGGGAAGTACTTGCTTATCTCTGA
CCGTGGTTATGGTAAGAGATGAAAGGTTCAACATGATTCTCTTTTATTAG
AAGTTAAAGAcaaatgatgaacttttagtcaaaatatttaaatatattta
GTTAAGAGGAAAGTCAAATTaatttctatcattgttgatCTCTCATGCAT
ATAATACTGACCGTGTTTTATGGGAAGTACTTGCTTATCTCTGACCGTGG
TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCTTTCATG
CATATAATACTGACCGTGTTTTATGGGAAGTACTTGCTTATCTCTGACCG
TGGTTATGGTAAGAGATGAAAGACTCAACATGGTTCTCCTATGCCATTAA
ATTTAATgacttttataaatctatttatTATCTATTTATTATCTATTTAT
TATCTATTTCTGTTTGTTTTAAAGTGTGTACTAACCACTTGGGAAATTGT
TTCTTTGCattaaaaagaaagcaaaaggaCAGTATAGATCATGAAAATGA
CATGTGCAtgaattttcactcaaaatttcaaaaatctgaaaacaagtttt
catttcatttcttcaGGTTGGGATGCTCAAGAGAAAACTCACTATAATGG
ATTCTACTTTCAGGCAGAAAGAACTAATGGTAAGCAAAAGAAACACTTTT
CCTATTTTGTATCTTGGATCTGGGCTGCCAAATTTTATGTCCCATCTGTA
CAGTACACTACAATCAttgacaaaaggttgtagacaaatgaaatttcact
gaaaaatgatgagaaatagagcaaaatgacacttcaatgtgtctgaaagg
ggagggAATTAAGACAAatacttttgaagtcgttgcattgcttttgaatt
gcttttgagggaaccacaagcaaaaaatcagcgttgtgatactggtgtaa
gccagttagtcaagcccttgtggttagcccttgtggttagactgcagtgg
gtgactttgagagactttcaaCAGCTTTGGATGGGTTAGGAAAGgaccca
gaacctcttgggaacttgtttttgatcgacattgaagtattttgcaaaat
tgcagaagtctacaaaccatGACTGTACAAGACATTTTAAACCTAACTTC
GCCAATCATATAAATTAGCCAATCATTAGGCTGTTAGTAAAATGTTTCAA
TTATAATAAATGTTTTACTTccattttcaggaaaaattATATGGTTGACC
CTTTCCTCAAGACACCTTATACTATGAAATGACGCATGATTATCCTtatc
gagcctctcctggattTCTAAGTCACAGTTTTGTTCTCAAGAGATACTGG
ACACAAtcatgaaaatgaaacaaacaCCCTTTGGAAATCAATAAACTATG
AGATTAACTCAAAACAGTACACTAAATATCACGAGCAATGATGACAATCA
CTACATCGAATTTAATTGATAATCATCTGGGTTTAATAATGTGTAATTTG
AGACACAATTTGATAGTCGTTTTGGTCAATATGTAGTGAATAGTTCTTGT
TTTTATCAATAATGTAATGATTTGTCTACATAAGAGCCAGTCTTTTAGAT
TAGACTAGTAAAGCCTATGAGATCGAaagatttttggtattttttaggGT
TTTACTGTAAGGATTTTTTTGGGATAAGTTaggtttttggtatttttttg
gGATTACTGGAAACTTCTGAGGtttaagattttgtttttttagatttttt
gggGTTATTTTGGAAAAGTGAGCAagattttttcgagttatttaccCCTT
GATGTAAATTCATTAAGTTGTCTGTGTTAGATTATGACATGGTGTCCTAT
GAGTCATTTGGTTGCTCAAGTTTAACCACCCCCCATCAGAGTTAGGAAAC
CTTTTTTATTGCCCCCATaccttttcaaaaacattaccGAAATCTaagtt
gattttcaaaaaggtttttctcCCTTTTGGCACTAAATGGACTTTAATAC
TCATTATTTCGATACTTTGTAATCCGTTTATGATTTACATAGTatactaa
aaagaaaatttcaagcaattgTAATTTactttttccgatttttttaatGG
CAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043161-exon-sc0003968-1491911889:13424..14029 | TCONS_00043161-exon-sc0003968-1491911889:13424..14029 | Clytia hemisphaerica | exon |
| TCONS_00043161-exon-sc0003968-1510915933:13424..14029 | TCONS_00043161-exon-sc0003968-1510915933:13424..14029 | Clytia hemisphaerica | exon |
| TCONS_00043161-exon-sc0003968-1575043694:13424..14029 | TCONS_00043161-exon-sc0003968-1575043694:13424..14029 | Clytia hemisphaerica | exon |
| TCONS_00043161-exon-sc0003968-1491911889:15790..15852 | TCONS_00043161-exon-sc0003968-1491911889:15790..15852 | Clytia hemisphaerica | exon |
| TCONS_00043161-exon-sc0003968-1510915933:15790..15852 | TCONS_00043161-exon-sc0003968-1510915933:15790..15852 | Clytia hemisphaerica | exon |
| TCONS_00043161-exon-sc0003968-1575043694:15790..15852 | TCONS_00043161-exon-sc0003968-1575043694:15790..15852 | Clytia hemisphaerica | exon |
| TCONS_00043161-exon-sc0003968-1491911889:16404..17276 | TCONS_00043161-exon-sc0003968-1491911889:16404..17276 | Clytia hemisphaerica | exon |
| TCONS_00043161-exon-sc0003968-1510915933:16404..17276 | TCONS_00043161-exon-sc0003968-1510915933:16404..17276 | Clytia hemisphaerica | exon |
| TCONS_00043161-exon-sc0003968-1575043694:16404..17276 | TCONS_00043161-exon-sc0003968-1575043694:16404..17276 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003968 | supercontig | sc0003968:13424..17276 + |
Blast
The following BLAST results are available for this feature:
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