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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043167 ID=TCONS_00043167|Name=TCONS_00043167|organism=Clytia hemisphaerica|type=transcript|length=1216bp
TGCAATTGCGATATACGTCAATCGCGGGATGCGCCTGACTGTCATAcgta
aaagttttcttaagcATCACTTTTGATAAACATCGCTTCACGGATTTGAT
TAAGCGTTCGAATACACCCCCTTGCCATGGTGTTTTTTGAAGTTAAACTT
CCAAACAATATCGTTATTTGTGGTTCTGTACTTCCGGGCCTATAAACGGG
GTCCAATTATCGGATACGACTAACTTTGGTACTCCATACCGAGCAATGAA
ACGTTTTAATACATCACAACACGTTTGACTGTCATAGTTCTTTACAATAT
CAAAGTGTACAGCACGACAAGATAAACATGTCATTAACGAAATCCAACAT
TTATGTGTAGATTTGTCATTTTCGTCGTAGACATTACGTACGAGATAGGG
ACCAGCATAATCAATGCCAATCGTTGAAAATGGAGTTTCAGCAAATCTAA
ACTTTGGTAAGTTTGACTTTTCAGGATAAAGGTAAGACGGACCTTCCATC
CTTCTACATACAGTACATTTATGTATAAAACTTCTGACCTTCTGTCGTAA
TCGTGgaacataaaatatcattttcatttcagCGACAGTTTCACGTGCAC
TATTATGGATTGCTTTCCTGTGTGCATCGGCAATGTAAAGTTCAGTTACA
TCATGTCCTGGTGGTAACCAAATAGGATGTCGCGTATCGTAGGGGAGAGG
CGCGTTTTCGAGTCGACCTCTTAATCGAAGTACCCCTATTTCATCGTAAA
ATAAGTCTAATTCACGAATTCGTTCCTTTGTGATACCTCTTTGTATCGAT
AAGATGAGACGAGTTTGTGCTTGACTCAAATCATCGACATTGATTAATGG
TTGTTGTTGCTCATTTTCTTCAATCATCTTTTGTTGATCATCTTCTTCGG
CCTGAGGccttttatttagtttttcatTTAGTCTTTCGttattcttcttt
attttctctCTCGCTCGTTGCAATAGTTTGGAGGTATATTTACCAACTAA
TGCTATAACTCTCAACAGTCTTGTGACATCACTTAATTTGGTTGTATCAA
CTAGGTTAGTAAAGTCGACTGTTGACacatgaatctcgtctcattaCAAC
CAATACCATCACTAAATCTTTCTCCACATTTCAACATTGGCCACTCACTC
TCAGCTTTAGTTAAAAAGTGAGGGCCGTGGAGCCATAAATCGTCAATaac
agtttttgactttccc Run BLAST on NCBI protein sequence of TCONS_00043167-protein >TCONS_00043167-protein ID=TCONS_00043167-protein|Name=TCONS_00043167-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
MIEENEQQQPLINVDDLSQAQTRLILSIQRGITKERIRELDLFYDEIGVL
RLRGRLENAPLPYDTRHPIWLPPGHDVTELYIADAHRKAIHNSARETVAE
MKMIFYVPRLRQKVRSFIHKCTVCRRMEGPSYLYPEKSNLPKFRFAETPF
STIGIDYAGPYLVRNVYDENDKSTHKCWISLMTCLSCRAVHFDIVKNYDS
QTCCDVLKRFIARYGVPKLVVSDNWTPFIGPEVQNHK Run BLAST on NCBI transcript from alignment at sc0003970:3178..4393 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043167 ID=TCONS_00043167|Name=TCONS_00043167|organism=Clytia hemisphaerica|type=transcript|length=1216bp|location=Sequence derived from alignment at sc0003970:3178..4393 (Clytia hemisphaerica)
gggaaagtcaaaaactgttATTGACGATTTATGGCTCCACGGCCCTCACT
TTTTAACTAAAGCTGAGAGTGAGTGGCCAATGTTGAAATGTGGAGAAAGA
TTTAGTGATGGTATTGGTTGtaatgagacgagattcatgtGTCAACAGTC
GACTTTACTAACCTAGTTGATACAACCAAATTAAGTGATGTCACAAGACT
GTTGAGAGTTATAGCATTAGTTGGTAAATATACCTCCAAACTATTGCAAC
GAGCGAGagagaaaataaagaagaataaCGAAAGACTAAatgaaaaacta
aataaaaggCCTCAGGCCGAAGAAGATGATCAACAAAAGATGATTGAAGA
AAATGAGCAACAACAACCATTAATCAATGTCGATGATTTGAGTCAAGCAC
AAACTCGTCTCATCTTATCGATACAAAGAGGTATCACAAAGGAACGAATT
CGTGAATTAGACTTATTTTACGATGAAATAGGGGTACTTCGATTAAGAGG
TCGACTCGAAAACGCGCCTCTCCCCTACGATACGCGACATCCTATTTGGT
TACCACCAGGACATGATGTAACTGAACTTTACATTGCCGATGCACACAGG
AAAGCAATCCATAATAGTGCACGTGAAACTGTCGctgaaatgaaaatgat
attttatgttcCACGATTACGACAGAAGGTCAGAAGTTTTATACATAAAT
GTACTGTATGTAGAAGGATGGAAGGTCCGTCTTACCTTTATCCTGAAAAG
TCAAACTTACCAAAGTTTAGATTTGCTGAAACTCCATTTTCAACGATTGG
CATTGATTATGCTGGTCCCTATCTCGTACGTAATGTCTACGACGAAAATG
ACAAATCTACACATAAATGTTGGATTTCGTTAATGACATGTTTATCTTGT
CGTGCTGTACACTTTGATATTGTAAAGAACTATGACAGTCAAACGTGTTG
TGATGTATTAAAACGTTTCATTGCTCGGTATGGAGTACCAAAGTTAGTCG
TATCCGATAATTGGACCCCGTTTATAGGCCCGGAAGTACAGAACCACAAA
TAACGATATTGTTTGGAAGTTTAACTTCAAAAAACACCATGGCAAGGGGG
TGTATTCGAACGCTTAATCAAATCCGTGAAGCGATGTTTATCAAAAGTGA
TgcttaagaaaacttttacgTATGACAGTCAGGCGCATCCCGCGATTGAC
GTATATCGCAATTGCA Coding sequence (CDS) from alignment at sc0003970:3178..4393 >TCONS_00043167 ID=TCONS_00043167|Name=TCONS_00043167|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at sc0003970:3178..4393 (Clytia hemisphaerica)
ATGATTGAAGAAAATGAGCAACAACAACCATTAATCAATGTCGATGATTT
GAGTCAAGCACAAACTCGTCTCATCTTATCGATACAAAGAGGTATCACAA
AGGAACGAATTCGTGAATTAGACTTATTTTACGATGAAATAGGGGTACTT
CGATTAAGAGGTCGACTCGAAAACGCGCCTCTCCCCTACGATACGCGACA
TCCTATTTGGTTACCACCAGGACATGATGTAACTGAACTTTACATTGCCG
ATGCACACAGGAAAGCAATCCATAATAGTGCACGTGAAACTGTCGctgaa
atgaaaatgatattttatgttcCACGATTACGACAGAAGGTCAGAAGTTT
TATACATAAATGTACTGTATGTAGAAGGATGGAAGGTCCGTCTTACCTTT
ATCCTGAAAAGTCAAACTTACCAAAGTTTAGATTTGCTGAAACTCCATTT
TCAACGATTGGCATTGATTATGCTGGTCCCTATCTCGTACGTAATGTCTA
CGACGAAAATGACAAATCTACACATAAATGTTGGATTTCGTTAATGACAT
GTTTATCTTGTCGTGCTGTACACTTTGATATTGTAAAGAACTATGACAGT
CAAACGTGTTGTGATGTATTAAAACGTTTCATTGCTCGGTATGGAGTACC
AAAGTTAGTCGTATCCGATAATTGGACCCCGTTTATAGGCCCGGAAGTAC
AGAACCACAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043167-exon-sc0003970-1491911889:3178..4393 | TCONS_00043167-exon-sc0003970-1491911889:3178..4393 | Clytia hemisphaerica | exon |
| TCONS_00043167-exon-sc0003970-1510915933:3178..4393 | TCONS_00043167-exon-sc0003970-1510915933:3178..4393 | Clytia hemisphaerica | exon |
| TCONS_00043167-exon-sc0003970-1575043694:3178..4393 | TCONS_00043167-exon-sc0003970-1575043694:3178..4393 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003970 | supercontig | sc0003970:3178..4393 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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