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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043175 ID=TCONS_00043175|Name=TCONS_00043175|organism=Clytia hemisphaerica|type=transcript|length=837bp
CACAAATTTAGAACAATTGAAAGTTGGTCAAGATTTCCGCATTTCCTTCG
ATGTCCGGTCACGCAATCCATCCGGCACACTCTTCTACGTGGTCGGAAAG
GAGGACTTCTTGAAAATCACCATCGAAAACATCCAAGATGACGGCTCGAT
CAAGGTGACGTGTAACAACGGTGGAGGGTTGTTCTCCGTGGCGTACAAAC
CGGAACCTTCCGTTTGCAACGGTGATATTTACAGTGTGCTTGtggagaag
aaaatgaaaacattgaaattgaCAGTCAATGGTGCCGTGACCGAAGAAAC
GACCACCAAATCAAGCACGTCCGCTGACACCAACTCGCCTGCTTACTTTG
GTGGACTTCCAGTTGATTTTCAACCATCTGACTACAAGCCATTTGAGGGC
TGCATCAGCAAAGTCGAAATTAACGGTGACCCTGTTGATTTCACAAGTGA
TGTCATCAAAGATGGTGCCGTCATGGCGGGATGTCCTGAGTGAGAAAGTG
AGTGAAAAAGCTGTCTGATGATACCTTTGGAAGAGGAAGGCTCCATAGAA
TTAAGGACTTGAAgcaaatgaaatttgaaataaacatACCAAATCACATA
CCGTGCTTAATAGGGAGAGACGAATTTGGCTATACCAAAGGATTTGCTAC
TTAAGCTTAGAAATAATATAGTAACTATGAAAACACTTCAATGTTGCATA
CTTTAATCAATTAACTCTGCTCGTGATAGGTTGAGAAATTATATCATAAC
AAAATAACCGGGCTGAATGACCGGGAGAGAGGGTGTTTAATTCTTGATAT
GCTTAAGTCAGGGGCTATCTTCTTGACATCTTTGAAC Run BLAST on NCBI protein sequence of TCONS_00043175-protein >TCONS_00043175-protein ID=TCONS_00043175-protein|Name=TCONS_00043175-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
TNLEQLKVGQDFRISFDVRSRNPSGTLFYVVGKEDFLKITIENIQDDGSI
KVTCNNGGGLFSVAYKPEPSVCNGDIYSVLVEKKMKTLKLTVNGAVTEET
TTKSSTSADTNSPAYFGGLPVDFQPSDYKPFEGCISKVEINGDPVDFTSD
VIKDGAVMAGCPE Run BLAST on NCBI transcript from alignment at sc0003975:6926..8336- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043175 ID=TCONS_00043175|Name=TCONS_00043175|organism=Clytia hemisphaerica|type=transcript|length=1411bp|location=Sequence derived from alignment at sc0003975:6926..8336- (Clytia hemisphaerica)
CACAAATTTAGAACAATTGAAAGTTGGTCAAGATTTCCGCATTTCCTTCG
ATGTCCGGTCACGCAATCCATCCGGCACACTCTTCTACGTGGTCGGAAAG
GAGGACTTCTTGAAAATCACCATCGAAAACATCCAAGATGACGGCTCGAT
CAAGGTGACGTGTAACAACGGTGGAGGGTTGTTCTCCGTGGCGTACAAAC
CGGAACCTTCCGTTTGCAACGGTGATATTTACAGTGTGCTTGTGGAGAAG
AAAATGAAAACATTGAAATTGACAGTCAATGGTGCCGTGACCGAAGAAAC
GACCACCAAATCAAGCACGTCCGCTGACACCAACTCGCCTGCTTACTTTG
GTGGACTTCCAGGTAGGTTTGGATCTTTTTGAAATCAAGTGTAAATGAAG
CTTTAAAGTCTAAATCTCTATGTCCAGTTTCATTCATTCTTGAGAAAATG
TTCAATTTCATCATAAATATCATAATTTCATTGTAAATTCATGGAATGAT
AAATTTGCGCGCTTTTCGCTTACCTGAAAACCGATCATATGCTTGATAAT
GCTTGCGTCATCATCTTTAGTATAGGCCTTTTTATAAATTATTTTGAGTA
CAACGAGTGCCTCGTTTTCAAATCATTACCAAGGTGATTAAGTCCCTTGA
GTCTTCAAATGTTACTTTTATGAATAGAGTTAACTTCTTATGAAAACTTC
TCTGGGAATCAATTAACATAGCAATATTTTGAAAATGATGCGAGCGTTGC
TTGATACGTAATTCATAGAAGGATCTACCGATCGGAAATTTCTGATTAAG
ACGTAATTCGACTTCTTTTGATTTAAAAAAAAGTATAACAAGGAAGAAGT
TTGAAATATTCATATCCTGTATACAACGTCCAACTTTCAAGAGATGGTTA
CAATTAATTATACAGTAATTGTTTTCTCCATTTCAGTTGATTTTCAACCA
TCTGACTACAAGCCATTTGAGGGCTGCATCAGCAAAGTCGAAATTAACGG
TGACCCTGTTGATTTCACAAGTGATGTCATCAAAGATGGTGCCGTCATGG
CGGGATGTCCTGAGTGAGAAAGTGAGTGAAAAAGCTGTCTGATGATACCT
TTGGAAGAGGAAGGCTCCATAGAATTAAGGACTTGAAGCAAATGAAATTT
GAAATAAACATACCAAATCACATACCGTGCTTAATAGGGAGAGACGAATT
TGGCTATACCAAAGGATTTGCTACTTAAGCTTAGAAATAATATAGTAACT
ATGAAAACACTTCAATGTTGCATACTTTAATCAATTAACTCTGCTCGTGA
TAGGTTGAGAAATTATATCATAACAAAATAACCGGGCTGAATGACCGGGA
GAGAGGGTGTTTAATTCTTGATATGCTTAAGTCAGGGGCTATCTTCTTGA
CATCTTTGAAC Coding sequence (CDS) from alignment at sc0003975:6926..8336- >TCONS_00043175 ID=TCONS_00043175|Name=TCONS_00043175|organism=Clytia hemisphaerica|type=CDS|length=984bp|location=Sequence derived from alignment at sc0003975:6926..8336- (Clytia hemisphaerica)
TTGATTTTCAACCATCTGACTACAAGCCATTTGAGGGCTGCATCAGCAAA
GTCGAAATTAACGGTGACCCTGTTGATTTCACAAGTGATGTCATCAAAGA
TGGTGCCGTCATGGCGGGATGTCCTGAGTGAACAAATTTAGAACAATTGA
AAGTTGGTCAAGATTTCCGCATTTCCTTCGATGTCCGGTCACGCAATCCA
TCCGGCACACTCTTCTACGTGGTCGGAAAGGAGGACTTCTTGAAAATCAC
CATCGAAAACATCCAAGATGACGGCTCGATCAAGGTGACGTGTAACAACG
GTGGAGGGTTGTTCTCCGTGGCGTACAAACCGGAACCTTCCGTTTGCAAC
GGTGATATTTACAGTGTGCTTGTGGAGAAGAAAATGAAAACATTGAAATT
GACAGTCAATGGTGCCGTGACCGAAGAAACGACCACCAAATCAAGCACGT
CCGCTGACACCAACTCGCCTGCTTACTTTGGTGGACTTCCAGTTGATTTT
CAACCATCTGACTACAAGCCATTTGAGGGCTGCATCAGCAAAGTCGAAAT
TAACGGTGACCCTGTTGATTTCACAAGTGATGTCATCAAAGATGGTGCCG
TCATGGCGGGATGTCCTGAGTGAACAAATTTAGAACAATTGAAAGTTGGT
CAAGATTTCCGCATTTCCTTCGATGTCCGGTCACGCAATCCATCCGGCAC
ACTCTTCTACGTGGTCGGAAAGGAGGACTTCTTGAAAATCACCATCGAAA
ACATCCAAGATGACGGCTCGATCAAGGTGACGTGTAACAACGGTGGAGGG
TTGTTCTCCGTGGCGTACAAACCGGAACCTTCCGTTTGCAACGGTGATAT
TTACAGTGTGCTTGTGGAGAAGAAAATGAAAACATTGAAATTGACAGTCA
ATGGTGCCGTGACCGAAGAAACGACCACCAAATCAAGCACGTCCGCTGAC
ACCAACTCGCCTGCTTACTTTGGTGGACTTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043175-exon-sc0003975-1575043694:7975..8336 | TCONS_00043175-exon-sc0003975-1575043694:7975..8336 | Clytia hemisphaerica | exon |
| TCONS_00043175-exon-sc0003975-1575043694:6926..7400 | TCONS_00043175-exon-sc0003975-1575043694:6926..7400 | Clytia hemisphaerica | exon |
| TCONS_00043175-exon-sc0003975-1510915933:7975..8336 | TCONS_00043175-exon-sc0003975-1510915933:7975..8336 | Clytia hemisphaerica | exon |
| TCONS_00043175-exon-sc0003975-1510915933:6926..7400 | TCONS_00043175-exon-sc0003975-1510915933:6926..7400 | Clytia hemisphaerica | exon |
| TCONS_00043175-exon-sc0003975-1491911889:7975..8336 | TCONS_00043175-exon-sc0003975-1491911889:7975..8336 | Clytia hemisphaerica | exon |
| TCONS_00043175-exon-sc0003975-1491911889:6926..7400 | TCONS_00043175-exon-sc0003975-1491911889:6926..7400 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003975 | supercontig | sc0003975:6926..8336 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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