TCONS_00043177 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043177
Unique NameTCONS_00043177
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length441

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043177 ID=TCONS_00043177|Name=TCONS_00043177|organism=Clytia hemisphaerica|type=transcript|length=441bp
NTTTTTAGAATGGAAATCAAAATATCTGATGTAGTGGTTTTTTTTACTAC
GTCTAGTCAAAGTGACTATCATATTTCGATACCTACGATATAATTCATAG
AGTAGATCTTTGGACTCCTTAGTTTTAGCATTAGCGTGTTTTGTTTGGTA
GTGGTCACGttttttgattgacttcaaaattccTGGCGTTATccatggtt
ttgtttttgatctaACTTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGCCTTAGCGTGTTTTGTTTGGTAGTGGTCAC
GttttttgattgacttcaaaattccTGGCGTTATccatggttttgttttt
gatctaACTTAACGTTTGGTAAGTTTGACTGTGCGTAGATGTCTCTCTAC
AAGTACTTTCATTCTgtcattaaaaatattgaaacaggaGT
Run BLAST on NCBI

transcript from alignment at sc0003976:2991..3431

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043177 ID=TCONS_00043177|Name=TCONS_00043177|organism=Clytia hemisphaerica|type=transcript|length=441bp|location=Sequence derived from alignment at sc0003976:2991..3431 (Clytia hemisphaerica)
ACtcctgtttcaatatttttaatgacAGAATGAAAGTACTTGTAGAGAGA
CATCTACGCACAGTCAAACTTACCAAACGTTAAGTtagatcaaaaacaaa
accatggATAACGCCAggaattttgaagtcaatcaaaaaaCGTGACCACT
ACCAAACAAAACACGCTAAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGTCAAGTtagatcaaaaacaaaaccatggA
TAACGCCAggaattttgaagtcaatcaaaaaaCGTGACCACTACCAAACA
AAACACGCTAATGCTAAAACTAAGGAGTCCAAAGATCTACTCTATGAATT
ATATCGTAGGTATCGAAATATGATAGTCACTTTGACTAGACGTAGTAAAA
AAAACCACTACATCAGATATTTTGATTTCCATTCTAAAAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026899XLOC_026899Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043177-exon-sc0003976-1491911889:2991..3431TCONS_00043177-exon-sc0003976-1491911889:2991..3431Clytia hemisphaericaexon
TCONS_00043177-exon-sc0003976-1510915933:2991..3431TCONS_00043177-exon-sc0003976-1510915933:2991..3431Clytia hemisphaericaexon
TCONS_00043177-exon-sc0003976-1575043694:2991..3431TCONS_00043177-exon-sc0003976-1575043694:2991..3431Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003976supercontigsc0003976:2991..3431 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.989145	1.08918	2.16793	1.3631	1.44356	1.79256	1.25192	0.736235	0.386592	0.159619	0.796413	0.916603	0.937836	0.333727	0.607836	0.869579	0.596303	0.372101	1.22145	1.44704	1.2243	1.08176	0.175337	0.715805	0.748445	1.61184	1.57598	1.34269	0.509192	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043177 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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