TCONS_00043178 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043178
Unique NameTCONS_00043178
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length806

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043178 ID=TCONS_00043178|Name=TCONS_00043178|organism=Clytia hemisphaerica|type=transcript|length=806bp
AGAAGTCAATGCCATTTCCGCCATCAATATGTGCCAAACAACTGACCATG
TTCAACTCCTTACTCGATCAGATTCGTCAACATGGATCAACTGATACTGA
CTACTCATCACTGCTACAAACCATCCAGGACAGCTTCCCAACAGCCCGTG
AAAGCCTACCTGCCAATCTACGACCATTCTGGGAAGTTAGAAATCGTCTA
TCGCATTGGAATGGTCTCATAATGTTCGACAAACGCCTTGTGATACCCAA
GAGCCTCCGTCATCAGATCCTTCAAGCACTTCATTCCGCCCATCAAGGCT
GCACAGGTAGGCTCGAGTCAACGATTGTATCTATTGGCCGGGAATCAACA
AAGATATCCACCGAATCCGTGTTTGCTGTAAAACTTGTATCAGTCACTCA
CCCAGTCAGCCCAAGGAACTGATCATCTAAAGCCCTCCACCGCAATATCC
ATTCCAAATGATCACCGGTGATTATTTCATTATTGCAAGTCACCACTATC
TGACGATCATTGATAAATATAGCGGCTGCAACTGCCTGTATCATTTCGGA
CCCAATGAAGCCACCAGTGCCACCCTGATATCCACTTGTCGCACCCTCTT
CACTAACTACGGCGTTCCAGAAGAATTTAGTTCAGATGGAGGACCTCAGT
TAACCGCAAACAAGTTCCAGCAATTCTTATCAGATTGGGGAGTCAAACAC
CGTCTATCATCAGCAGAGTACCCCAGTCTAATGGCAGAGCAGAGCTAGGG
GTGAAAGCTGCAAAAAGAATTCTACTCGATAACTTATCACCAAATGGCAC
AATCGA
Run BLAST on NCBI

protein sequence of TCONS_00043178-protein

>TCONS_00043178-protein ID=TCONS_00043178-protein|Name=TCONS_00043178-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
KSMPFPPSICAKQLTMFNSLLDQIRQHGSTDTDYSSLLQTIQDSFPTARE
SLPANLRPFWEVRNRLSHWNGLIMFDKRLVIPKSLRHQILQALHSAHQGC
TGRLESTIVSIGRESTKISTESVFAVKLVSVTHPVSPRN
Run BLAST on NCBI

transcript from alignment at sc0003976:7454..8259

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043178 ID=TCONS_00043178|Name=TCONS_00043178|organism=Clytia hemisphaerica|type=transcript|length=806bp|location=Sequence derived from alignment at sc0003976:7454..8259 (Clytia hemisphaerica)
TCGATTGTGCCATTTGGTGATAAGTTATCGAGTAGAATTCTTTTTGCAGC
TTTCACCCCTAGCTCTGCTCTGCCATTAGACTGGGGTACTCTGCTGATGA
TAGACGGTGTTTGACTCCCCAATCTGATAAGAATTGCTGGAACTTGTTTG
CGGTTAACTGAGGTCCTCCATCTGAACTAAATTCTTCTGGAACGCCGTAG
TTAGTGAAGAGGGTGCGACAAGTGGATATCAGGGTGGCACTGGTGGCTTC
ATTGGGTCCGAAATGATACAGGCAGTTGCAGCCGCTATATTTATCAATGA
TCGTCAGATAGTGGTGACTTGCAATAATGAAATAATCACCGGTGATCATT
TGGAATGGATATTGCGGTGGAGGGCTTTAGATGATCAGTTCCTTGGGCTG
ACTGGGTGAGTGACTGATACAAGTTTTACAGCAAACACGGATTCGGTGGA
TATCTTTGTTGATTCCCGGCCAATAGATACAATCGTTGACTCGAGCCTAC
CTGTGCAGCCTTGATGGGCGGAATGAAGTGCTTGAAGGATCTGATGACGG
AGGCTCTTGGGTATCACAAGGCGTTTGTCGAACATTATGAGACCATTCCA
ATGCGATAGACGATTTCTAACTTCCCAGAATGGTCGTAGATTGGCAGGTA
GGCTTTCACGGGCTGTTGGGAAGCTGTCCTGGATGGTTTGTAGCAGTGAT
GAGTAGTCAGTATCAGTTGATCCATGTTGACGAATCTGATCGAGTAAGGA
GTTGAACATGGTCAGTTGTTTGGCACATATTGATGGCGGAAATGGCATTG
ACTTCT

Coding sequence (CDS) from alignment at sc0003976:7454..8259

>TCONS_00043178 ID=TCONS_00043178|Name=TCONS_00043178|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0003976:7454..8259 (Clytia hemisphaerica)
TCAGTTCCTTGGGCTGACTGGGTGAGTGACTGATACAAGTTTTACAGCAA
ACACGGATTCGGTGGATATCTTTGTTGATTCCCGGCCAATAGATACAATC
GTTGACTCGAGCCTACCTGTGCAGCCTTGATGGGCGGAATGAAGTGCTTG
AAGGATCTGATGACGGAGGCTCTTGGGTATCACAAGGCGTTTGTCGAACA
TTATGAGACCATTCCAATGCGATAGACGATTTCTAACTTCCCAGAATGGT
CGTAGATTGGCAGGTAGGCTTTCACGGGCTGTTGGGAAGCTGTCCTGGAT
GGTTTGTAGCAGTGATGAGTAGTCAGTATCAGTTGATCCATGTTGACGAA
TCTGATCGAGTAAGGAGTTGAACATGGTCAGTTGTTTGGCACATATTGAT
GGCGGAAATGGCATTGACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026900XLOC_026900Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043178-proteinTCONS_00043178-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043178-exon-sc0003976-1491911889:7454..8259TCONS_00043178-exon-sc0003976-1491911889:7454..8259Clytia hemisphaericaexon
TCONS_00043178-exon-sc0003976-1510915933:7454..8259TCONS_00043178-exon-sc0003976-1510915933:7454..8259Clytia hemisphaericaexon
TCONS_00043178-exon-sc0003976-1575043694:7454..8259TCONS_00043178-exon-sc0003976-1575043694:7454..8259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003976supercontigsc0003976:7454..8259 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.655525	0.793118	2.63749	1.8286	1.34865	1.24165	1.45177	1.87914	0.369578	0.561753	0.64579	0.45203	0.209378	0.355045	0.437676	0.193601	0.634734	0.25277	0.320344	0.36137	0.254517	0.381453	0.0681375	0	0.213209	0.336162	0.133744	0	0.319927	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043178 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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