TCONS_00043185 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043185
Unique NameTCONS_00043185
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length391

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043185 ID=TCONS_00043185|Name=TCONS_00043185|organism=Clytia hemisphaerica|type=transcript|length=391bp
GCTAATTGGATCGTTCAAAGCCGACACAGAAAGCTTACTTGAGTCCTCCC
TCGTTCTTTCTCTATAAGATATCGGCCTGTGCTGAGAAGTTTTGATTACT
CCTTTTCAGAAAGGGTTGATGGTACTCTCAGCAATGACGAAAGAAACAAC
ATAATGAATAACATCggagaaaataaatatatattcTTTGATAACGAAGT
GGCCCACCAAGACTTGCTTGAGCGAGTTGAAAGTGATTATGTGGGTGATT
GTGGTGATTACTATGAGACTTAATATTGTAgttagtttttttatcaaata
tttattTGTCATCGACATTTTTATCATAACCCtattattaaaaaagaaga
atgaacttggaaaataaaatcttttcgtTCTTGCTTGCAAT
Run BLAST on NCBI

transcript from alignment at sc0003983:730..2475-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043185 ID=TCONS_00043185|Name=TCONS_00043185|organism=Clytia hemisphaerica|type=transcript|length=1746bp|location=Sequence derived from alignment at sc0003983:730..2475- (Clytia hemisphaerica)
GCTAATTGGATCGTTCAAAGCCGACACAGAAAGCTTACTTGAGTCCTCCC
TCGTTCTTTCTCTATAAGATATCGGCCTGTGCTGAGAAGTTTTGATTACT
CCTTTTCAGAAAGGTAAAATCATTGATAATTACTCTCTCATTACTTCCTT
TCTCCAAAATAACCTTATTAAGGCTTTTCGATACAGTTTTGAATCTAACA
CAATGAATATATTTCTGAAGGGATGAGATAGCGGTTTGATTATTCCCTAG
TAAACCCCAGTATCGTCAGTGGCCAATGGCATAAAATAAAGTGGATTGCT
TTTAATATGGGTACTGATATTACATAACTTTCAGGTTACCAAATATAGTG
AAGATCATGACTCAAGATATACTAAAAATTCTTCAAATGGAATGAGGGGA
GGGAGGCCTTACCCATCTAGTCCAAGACACGTATATATCATTATGGAAAT
GATCTCTATCTNGAGGGGTTTGTAAATATTTCCAATAATAGGGATAAAGT
CACATGGTGTTTTTAACACCGGAGACGATTCGGGAGGCCTTACCCATCTA
GTCTAAGACACGTATATATCATTATGGAAATGATCTCTATCGATACTCTA
CTTTTCCATTTTAGGGTTGATGGTACTCTCAGCAATGACGAAAGAAACAA
CATAATGAATAACATCGGAGAAAATAAATATATATTCTTTGGTAAGTTGA
CCATCTTTCTCGTTTGATTGATAACAAAATTACAAAAAATCAGATCTGAT
TTGCGGAAGAGCAAAGAAAAGGTTGCAAAAACTAATAAATGAAGCCCTAC
AGCTATGGTAGGTCAAGTTCGTTAAATTGAGTAGTCTACACCTAACACCT
CTTTCTCAGTGACCTGGTGAGAGTTTTAAGCTAGTGTGGATAACTTGAAG
GTGCTAAAATTCCAAAAAGGGTAGAATAATTTTGTTTTATGGATATAGGT
TTTAGCTCAACAGCTCATACATTCAGTGCACTGTCCAAAAAGTTCAAAGT
TTTTCTCGATTAGAGATGAAATTTAAGGGTATTTTATCACAGGGACAACA
TTTGTTAAAAAGTTACTTTTTAGCCGATTTCTGTAGTGGGGAGGGGAGTC
ACCGGGTCTGCAAAGTTTCCTAATTTTAAATTCGAGAAAAAGGAGGGAAA
ATTAAAGAGATCGTTATGTTATGATAAAGACCCGACAGCATTCCCTCAAC
GGGAAGAAACATGAGGATAATGTTATCCGGGAAAAATGTTTGTTGTTGAA
AAATTCATTCACATCAAGAAAATTCGGGTATATTCACTTGCATTTGCTCG
ATCATATTTCAAATTACCAAAGCCTACAAAACTAACTTTTAAAATACCGT
AGATGCACGGTTATACCTTTTAATCATTTAATATTGAATTTGAACCTTAG
ATTTGGCAAAATAGAGTTAAATTACGAAAAATATTTTGGTCAGTGTAATT
GAAGGCCGTGAAATGTTCCCTGGTAAAATTTAACTATGGAATTATTTGTC
AATTTTACATTTTTGTGATTCTTTTATTATTTTTTTCTACTTTAGATAAC
GAAGTGGCCCACCAAGACTTGCTTGAGCGAGTTGAAAGTGATTATGTGGG
TGATTGTGGTGATTACTATGAGACTTAATATTGTAGTTAGTTTTTTTATC
AAATATTTATTTGTCATCGACATTTTTATCATAACCCTATTATTAAAAAA
GAAGAATGAACTTGGAAAATAAAATCTTTTCGTTCTTGCTTGCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026906XLOC_026906Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043185-exon-sc0003983-1575043694:2363..2475TCONS_00043185-exon-sc0003983-1575043694:2363..2475Clytia hemisphaericaexon
TCONS_00043185-exon-sc0003983-1575043694:1785..1861TCONS_00043185-exon-sc0003983-1575043694:1785..1861Clytia hemisphaericaexon
TCONS_00043185-exon-sc0003983-1575043694:730..930TCONS_00043185-exon-sc0003983-1575043694:730..930Clytia hemisphaericaexon
TCONS_00043185-exon-sc0003983-1510915933:2363..2475TCONS_00043185-exon-sc0003983-1510915933:2363..2475Clytia hemisphaericaexon
TCONS_00043185-exon-sc0003983-1510915933:1785..1861TCONS_00043185-exon-sc0003983-1510915933:1785..1861Clytia hemisphaericaexon
TCONS_00043185-exon-sc0003983-1510915933:730..930TCONS_00043185-exon-sc0003983-1510915933:730..930Clytia hemisphaericaexon
TCONS_00043185-exon-sc0003983-1491911889:2363..2475TCONS_00043185-exon-sc0003983-1491911889:2363..2475Clytia hemisphaericaexon
TCONS_00043185-exon-sc0003983-1491911889:1785..1861TCONS_00043185-exon-sc0003983-1491911889:1785..1861Clytia hemisphaericaexon
TCONS_00043185-exon-sc0003983-1491911889:730..930TCONS_00043185-exon-sc0003983-1491911889:730..930Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003983supercontigsc0003983:730..2475 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.194933	0	0.220713	0.282204	2.79829	0.689389	3.02379	1.33587	0.328532	1.57867	0.987464	0	0.388931	0.538545	0.110689	0	21.1876	16.1799	0	0	2.39529	2.44179	0.447012	0.143784	0.627872	0.861619	2.20053	2.3624	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043185 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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