TCONS_00043191 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043191
Unique NameTCONS_00043191
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043191 ID=TCONS_00043191|Name=TCONS_00043191|organism=Clytia hemisphaerica|type=transcript|length=406bp
TAGCAATtgattcaaaaactttcaaattatcATCCCTTTATCGAACTTAT
GTGTGTCTTAGTGtttcaaaccttttttccaGTTTTCAGtcaatttctta
aaaatatttaaagactGTGACAGACTGTGATTCAATCAAAGATACAATAT
GGAAAACCAAGAGGATCAAGAACTCAAGCAAAGGATGCGTGACCAGCTCA
TGCAAAGTCAAAGTTTCTACCCAACCAACAGTCCAATGCCACCAAGCAAC
CAACCTGCTGGTATATATTACCCATCAAACCCTTCAAATGCACCACCATC
AAATGCACCAGTCACTCCAATGACTGGACAACCCATGACACCACAACCAA
TGACTCCAATGTCCGCCATGTCTGAACCATCCGGTATTGTCCCTCAACTA
CAGTAA
Run BLAST on NCBI

transcript from alignment at sc0003991:3728..4602-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043191 ID=TCONS_00043191|Name=TCONS_00043191|organism=Clytia hemisphaerica|type=transcript|length=875bp|location=Sequence derived from alignment at sc0003991:3728..4602- (Clytia hemisphaerica)
TAGCAATTGATTCAAAAACTTTCAAATTATCATCCCTTTATCGAACTTAT
GTGTGTCTTAGTGTTTCAAACCTTTTTTCCAGTTTTCAGTCAATTTCTTA
AAAATATTTAAAGACTGTGACAGACTGTGATTCAATCAAAGATACAATAT
GGAAAACCAAGAGGATCAAGAACTCAAGCAAAGGATGCGTGACCAGGTAT
AAATATTGTTTTGTCATTGACCCAGAGCATAGTGTAGTGATAGGTCCTTT
TCTTTTTGTAACTCTCATTTTACCTTCAAGCTGTATACTACGAGAAAAAA
AATACTACATAACATACCTCTATTCAATGTCACCAGACTAAATGCTTGAC
CTGCGTTAAAAATTTTACATTCATTTGCCAACAAGTAAAAAATAAATTAT
TACTGTCAGTTACTCCTGTAGGATTTCAAGTATATAATTATAAAAGCTCT
TGTGCACATGAAAAATTCCATTGGGAAAATAGCACGAATGTTATACCTGT
ATCAACNTTGTGCACATGAAAAATTCCATTGGGAAAATATCACGAATGTT
ATACCTGTATCAACGATATAATGCAATGATCAATTATTATGAAACCCATC
GACTAACAGCACTGACAAGATAGGAATATCATTATCATCATTCTTTCTTT
ATATGATTTTTAAAGCTCATGCAAAGTCAAAGTTTCTACCCAACCAACAG
TCCAATGCCACCAAGCAACCAACCTGCTGGTATATATTACCCATCAAACC
CTTCAAATGCACCACCATCAAATGCACCAGTCACTCCAATGACTGGACAA
CCCATGACACCACAACCAATGACTCCAATGTCCGCCATGTCTGAACCATC
CGGTATTGTCCCTCAACTACAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026912XLOC_026912Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043191-exon-sc0003991-1575043694:4407..4602TCONS_00043191-exon-sc0003991-1575043694:4407..4602Clytia hemisphaericaexon
TCONS_00043191-exon-sc0003991-1575043694:3728..3937TCONS_00043191-exon-sc0003991-1575043694:3728..3937Clytia hemisphaericaexon
TCONS_00043191-exon-sc0003991-1510915933:4407..4602TCONS_00043191-exon-sc0003991-1510915933:4407..4602Clytia hemisphaericaexon
TCONS_00043191-exon-sc0003991-1510915933:3728..3937TCONS_00043191-exon-sc0003991-1510915933:3728..3937Clytia hemisphaericaexon
TCONS_00043191-exon-sc0003991-1491911889:4407..4602TCONS_00043191-exon-sc0003991-1491911889:4407..4602Clytia hemisphaericaexon
TCONS_00043191-exon-sc0003991-1491911889:3728..3937TCONS_00043191-exon-sc0003991-1491911889:3728..3937Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003991supercontigsc0003991:3728..4602 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
42.1411	43.2016	132.744	146.826	66.3012	52.584	52.3267	63.9441	31.414	44.5506	36.4911	35.0222	28.2662	39.4299	27.6105	42.7993	44.8841	39.492	17.8039	18.0295	26.4664	20.3833	36.3418	35.2927	64.0004	65.0568	16.298	13.4406	27.5843	24.2346
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043191 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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