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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043216 ID=TCONS_00043216|Name=TCONS_00043216|organism=Clytia hemisphaerica|type=transcript|length=1704bp
ATTAAATCTGAAGGTTATTTTAGAAATTACAAAGCCTTACAAACTTAGGA
GAGGAAAATATATTTCAGGTGGGTCAGTATAAAAAGGAAATGACCAGAAT
GTACAAACCATCTTTTTTAATAGAAAACACAAAACCCTGGAAAAGTCATG
ACACCTGCCATCAAAGAACAATTGATACAATTTATAAGAGATGAAAATAT
TGTAGCCTTGTACCATGTCCTGCAAAAAGAAGAACCATCCAAAATGAATC
AGCTGTTTCTGAAGAAATTAAAGAAAGTAATATCGAACGAAATTTCCTCA
ATATTCAAAGACAAAACGAGCCCTTTCAAAGGTAAGGTGTTGTTATAAAG
AGTTTCACATCACTATATTGTTATGGTCCTGTATGGGTAAAATATAATGT
CCTTACTTTAATAGCTCGATTGCTAAAAAGAAAGCATCAAACATCATCTG
TTATGTCTTGAAGGTGTATAAGTATTTTTTCTAGGACAAGTCTACACCGT
AATTTGTTCTACAAAATGAACAAAATGACGTTTTTTTTAAGGTGCTGACC
CCAAAAACTTGAAAGATCTCAGTTACAAGAGACTTGAGAATGAGCTGATT
ATGAAAGCCCCAACAGTCTACACAGTGGTGCAGAAGATCGCAATCAACCC
TAGGATAGGAAGAAACAAAATAAAAACGAAAGAGAGTTTGGTACCTGGAA
TTGTGAATGCTGTGGGTAGTCTTTTCAAGTGCAGGAATAAAAATTACAAT
ACTTGTGCACAAATGGGCAGCATGATATTGAGGAAAGGGAGAGCAGACAA
GATGTGTATTGCGCGACTGCACAAATTGAGTTTATGCATGTCATATTCTA
CAACACACAAAGTTCAAGAAAAAATTGGTGAGTGATTGAGATTGGAAGAG
ATAGTAGGCTACTACCATCattagaaaatttgatctcTAGGGAGTCGAGC
AAACTTTGACACTTTAACTATACAGCACGACTTTTATTAGCCAGAATGGT
TGTTTATATATTTCAACTCTTTATTTGTAGGTGAAGATTACAAACTCCCA
GTGCTTGAATGGGCGAAAGAACTGGAAAGCCAGCTGTTGTATCTGAAAAA
AACAACTCAGATGGAACGAATTGAACAAATTCAATTAGAGCACGACTACT
TCTCCAGCACAACACCGACTTTAGCAACAACACAATTACAACAATCATCC
ACACAACAGTGCACTACAACACAAATGGTGGTGACAAACCCTcaagttaa
atttcatttcaaaacggATATTTTCTTCAAAGCGTTTAAAAGGTGAAtag
attcaatttttaaaaagatcTCCACAAAAGACTTACATGGAAAGTGTTGT
ACCAAATGTTTAATTATAATGCCTATTACTTTTCAAAGGACAGCTAAGAA
GGGAAGGGTTCTAAGAGCACAGGTAAGTTTATAGTCACATCCTCAAAATG
TATAACACCAAGTTTTATGTGCTTGCTGTTCAACCAATATGTTTAACAAT
AAAATGTATTGTTGGGATTTAGACTGTAATGTATGTACAAATGACTCTTT
TTTAGCTTTTGGAACAAATTCATCATAGTTCTTGACAACCTAGATGTAAA
TAGTAAACGACGCCACATGacaattggaaaaaaaaacgtAGATCGACATC
TTACACACATCATTGCCGTGCAAAACAGAGTAAATACCCCTACAGAGCTG
ATTG Run BLAST on NCBI transcript from alignment at sc0004018:1195..2898 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043216 ID=TCONS_00043216|Name=TCONS_00043216|organism=Clytia hemisphaerica|type=transcript|length=1704bp|location=Sequence derived from alignment at sc0004018:1195..2898 (Clytia hemisphaerica)
CAATCAGCTCTGTAGGGGTATTTACTCTGTTTTGCACGGCAATGATGTGT
GTAAGATGTCGATCTacgtttttttttccaattgtCATGTGGCGTCGTTT
ACTATTTACATCTAGGTTGTCAAGAACTATGATGAATTTGTTCCAAAAGC
TAAAAAAGAGTCATTTGTACATACATTACAGTCTAAATCCCAACAATACA
TTTTATTGTTAAACATATTGGTTGAACAGCAAGCACATAAAACTTGGTGT
TATACATTTTGAGGATGTGACTATAAACTTACCTGTGCTCTTAGAACCCT
TCCCTTCTTAGCTGTCCTTTGAAAAGTAATAGGCATTATAATTAAACATT
TGGTACAACACTTTCCATGTAAGTCTTTTGTGGAgatctttttaaaaatt
gaatctaTTCACCTTTTAAACGCTTTGAAGAAAATATccgttttgaaatg
aaatttaacttgAGGGTTTGTCACCACCATTTGTGTTGTAGTGCACTGTT
GTGTGGATGATTGTTGTAATTGTGTTGTTGCTAAAGTCGGTGTTGTGCTG
GAGAAGTAGTCGTGCTCTAATTGAATTTGTTCAATTCGTTCCATCTGAGT
TGTTTTTTTCAGATACAACAGCTGGCTTTCCAGTTCTTTCGCCCATTCAA
GCACTGGGAGTTTGTAATCTTCACCTACAAATAAAGAGTTGAAATATATA
AACAACCATTCTGGCTAATAAAAGTCGTGCTGTATAGTTAAAGTGTCAAA
GTTTGCTCGACTCCCTAgagatcaaattttctaatGATGGTAGTAGCCTA
CTATCTCTTCCAATCTCAATCACTCACCAATTTTTTCTTGAACTTTGTGT
GTTGTAGAATATGACATGCATAAACTCAATTTGTGCAGTCGCGCAATACA
CATCTTGTCTGCTCTCCCTTTCCTCAATATCATGCTGCCCATTTGTGCAC
AAGTATTGTAATTTTTATTCCTGCACTTGAAAAGACTACCCACAGCATTC
ACAATTCCAGGTACCAAACTCTCTTTCGTTTTTATTTTGTTTCTTCCTAT
CCTAGGGTTGATTGCGATCTTCTGCACCACTGTGTAGACTGTTGGGGCTT
TCATAATCAGCTCATTCTCAAGTCTCTTGTAACTGAGATCTTTCAAGTTT
TTGGGGTCAGCACCTTAAAAAAAACGTCATTTTGTTCATTTTGTAGAACA
AATTACGGTGTAGACTTGTCCTAGAAAAAATACTTATACACCTTCAAGAC
ATAACAGATGATGTTTGATGCTTTCTTTTTAGCAATCGAGCTATTAAAGT
AAGGACATTATATTTTACCCATACAGGACCATAACAATATAGTGATGTGA
AACTCTTTATAACAACACCTTACCTTTGAAAGGGCTCGTTTTGTCTTTGA
ATATTGAGGAAATTTCGTTCGATATTACTTTCTTTAATTTCTTCAGAAAC
AGCTGATTCATTTTGGATGGTTCTTCTTTTTGCAGGACATGGTACAAGGC
TACAATATTTTCATCTCTTATAAATTGTATCAATTGTTCTTTGATGGCAG
GTGTCATGACTTTTCCAGGGTTTTGTGTTTTCTATTAAAAAAGATGGTTT
GTACATTCTGGTCATTTCCTTTTTATACTGACCCACCTGAAATATATTTT
CCTCTCCTAAGTTTGTAAGGCTTTGTAATTTCTAAAATAACCTTCAGATT
TAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043216-exon-sc0004018-1491911889:1195..2898 | TCONS_00043216-exon-sc0004018-1491911889:1195..2898 | Clytia hemisphaerica | exon |
| TCONS_00043216-exon-sc0004018-1510915933:1195..2898 | TCONS_00043216-exon-sc0004018-1510915933:1195..2898 | Clytia hemisphaerica | exon |
| TCONS_00043216-exon-sc0004018-1575043694:1195..2898 | TCONS_00043216-exon-sc0004018-1575043694:1195..2898 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004018 | supercontig | sc0004018:1195..2898 . |
Blast
The following BLAST results are available for this feature:
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