TCONS_00043229 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00043229
Unique Name	TCONS_00043229
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	447

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0004034:4329..7781+

transcript sequence

>TCONS_00043229 ID=TCONS_00043229|Name=TCONS_00043229|organism=Clytia hemisphaerica|type=transcript|length=447bp
AGAAAATCAGGCTGCAAGTCACGGCGGACCTCGACAAAGATGATTTCCAT
CGGCAGCACCGGCTCTGTGGTCTTCTTGTGTTGGTCACCACACCACTGGT
AAATGTTTCATCAATTTGGTTATTTATTGGCGAATTTTCTTTGAAGAAAT
CCTATTGCGATAAATAATATGAATCATATTAATGTGAAGatcaaatttca
aagaatttgCTGGACATGCATATACTACAGTGATGACCCGTGAAAGAATC
CAGGacGAAAGGCATCATAACCAAGAAGAAAACGAGCTGCCGAACGAGCT
GCTAATTTTTTTATGCATAAAGCTTTTTATTTTAAGGacaattttttatt
atatttccaATAAATCATAAAAGTATGGGATCTTTTTTTCATTGTCTCGT
AAAAGTTTGAATATTAGAAGGATGAGAATAGTAAAACTCAAAATCCA

Run BLAST on NCBI

transcript from alignment at sc0004034:4329..7781+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00043229 ID=TCONS_00043229|Name=TCONS_00043229|organism=Clytia hemisphaerica|type=transcript|length=3453bp|location=Sequence derived from alignment at sc0004034:4329..7781+ (Clytia hemisphaerica)
AGAAAATCAGGCTGCAAGTCACGGCGTGAGTAAACAAATGACTTATCACA
AAAGCCGTCTATTTTTCTTGGGTATATATACCAGGGGATGTCGATCGGTT
ATGATCAAATTTGATCGACTTAGCTTCGATTTATTTACGATTGGTATTGC
TGTTTACGCGACCAACNAAGTGATTAGTCGAATCAAACGAAGTCGATCAA
AGTGATTGTCGAatcaatcaaagtcaatcaaaacttcaaaaaaatgtaaa
tctcCGATTGATTTCGATCGGTTATGATCAAATTTGATCGACTTAGCTTC
GATTTATTTACGATTGGTATTGCTGTTTACGCGACCAACTCACTTCAAAC
TGATTTTTTAATCGAATTAATCAAACTtgatcgaacctaatcgaacgatT
ATATTTCGATTAGTCAAACTAATCGAGCTTccagattttttccaaaattg
tgagtgttcgattaagttcgatcactAATTACGGTTCGACTAGTTCGACA
ACCTGATTTGTTCGATTAGTTCGTACCATTCATCATTCATATTCAAAGTC
TGACCTCAAAGTGAAAATTGGAATTCAAAATCGGGAAAACTATTCCCGAT
ATCACTTTCCCAAAACACTCCTGGTAAATTCATGCCAGCAACGCTATCAG
ATCGGGTGCATCTGCCGGGCGTCAATAATTACCGTGCATGTTTAAAAAGT
TTGTTCACGTGGCATGGACGCTGGCATTCATGCGGACTAAATATGGCGGT
AATCTAATATATGTTCCGTtggcgtcgcccgaccgactcaccttcaaaac
ataaatcccGAGTCAGACGAGTCGGAAAAATGTTGGAAATTTCTAAGTCG
AAATACGACGAcgcggtagggccaatacccCCGTGAGCCAAAAATAAGGT
CCACTTTTTAAGGCTAACACATGCGCGCGCGCATTTAGTTTGgtaaatca
aagatggcggcaagagATTTTGGAtttactagatttaaaaaacccgacaa
aatttactaGCGACTGGAATTGAAGATATTTTatgacgcgaacggaacat
attttagattgcCGCCTATCCGGGTGAGCTACATATCTGGGTGCGCGAAC
CAAATATCCGGGAGGGGCAACTTTACACggtcaaaaataagaaattatgt
tttctttcgactttgttttgtttttgcccgAGTGACTCGGTGACTCGTGA
GACCGGGGTCCATAAAGGAGAAATTGATAACAACATTCAAAACAATCAAC
AACAACCCCAACAACCTGCTCCCCCTGCTGGCGCTGCTGTTGACCCTGAT
TCCCTGATGGGTGGAATATATCAAATTGGAAGGAAGGTGATAAGGATCTG
ACATGGCTTGGTGATTTTGCCGGAGAAGAAGGCTTTTTAATTGACATGCC
AGAGAATGTAACTGAGCTGGATTTAACGGATGATGTGCTTCAATCAATCA
CCACTGAGACCAATAGATATGCCAGAACCTAACTGGACAAAGCCGATGAA
CATAATAGATTGAAACCTAATTCCAGATTCAGACAATGATCAGAAAATGG
tcgctgactctttttaaaaagcgttgatgacatctttgagttgtgttttc
aacgacgcaaaaaaaaaatcaactttgaatTTAATCCAAGATCTTAGATT
GTTGTCATGGTTACtgttctctgcgttgattgcgcgctcaGTATaatctc
gattggtcggcacagttttgaaaaaactttcgtaTAAGCATATGATAAGC
ATAATGTGAGGCTAAAAAAAAGTTTGCTAAGCTTAATGAGCCTCAGCCAA
AATTTCTCGTATGCGTATAAGTACTTTAAggacagaaactttcgcaagca
gaaactttcgcctttggtaagaaattaaacctgaaaaacgcgaattaact
tttcataaaaaagggttgctgatacaggggtgttttcATAGGGCAATTTC
CCAATGGATTGAAActttaatgtatttttttccAACAGGGACCTCGACAA
AGATGATTTCCATCGGCAGCACCGGCTCTGTGGTCTTCTTGGTAATATCA
TCTGTTCTTCATGATGAGTTGAATGTGGTGTGTTTTATGCATAAACCTCA
GCATTGCTTTCCCAGTGTCGTTTGAGTGTCATGGTAaacgccatggcttg
gcagtTCACGTATGTAAAGTCACAGTctctgtcagcgccgtgattcctac
tcctttgggactaggacccattccgatacATTCTGAAGTTCGGGGAAAAT
GTAGTACATAGCGTGGTTAGCAGGGAGCAGAAGGGGCTGTCTTCTCGTAT
GGCGGTTTTTCTCAGGGGGTGTCGAAATGTTGCGCTATAAGGCCTTTCAC
AACAAAATTCTCAGGgccattttctttttaaatccaaaaaatatGGTAGT
TTTTCGAAAAAAGGGAATATTGGTAGAGAAATATCCCCCCTGGTAAAGAA
AGTGCGAATTTGTCAACATTTCAACATTTTATCTCCAAGTGTTGGTCACC
ACACCACTGGTAAATGTTTCATCAATTTGGTTATTTATTGGCGAATTTTC
TTTGAAGAAATCCTATTGCGATAAATAATATGAATCATATTAATGTGAAG
GTAGGTTCGGACGTTTCAAAGAGCCATAAATTGAATTTAAACCAGTATAA
CTTAATTATCCGAAATCGTAAACGAACTAACTTCGACCTGCATTTTTTAT
ACGATTTTATTCAAGATTTCAACAAGTTCATGTCTAGTGGGAGAAATTTT
ACAATTGATCGGGtatgtaatttttttacattgaatacGGTGTACACAGG
TGTACACATAAAAATAATTCTTAAGAAGAGAAAGATTTGATTAAAGAACT
ACACACTTAATAATCTACTGAAATTTTTTCATAGatcaaatttcaaagaa
tttgCTGGACATGCATATACTACAGTGATGACCCGTGAAAGAATCCAGGg
tagaaattattattttaaaaaatgtgtTGCTTTTCCATACATAAACCTCG
CTACGTTTTAAACGTTATTCTAAAGGCCGTTACAGTAAAAAGTGtcataa
aatataattaaaatgaTTGATCCTCCTGAATATTTTAAATGTAAAGTTCA
AACGCAGCagcgttttcattttatttgagtaaaattcaaaacatataatC
AGACGTTTCGGTGTCATCCGATCACCATCATCagtaaaattgaaatgaaa
ttctgTCATAAAATATCATTTCATATTTTAAGTTGAAAAcaattttaact
tttgttttagacGAAAGGCATCATAACCAAGAAGAAAACGAGCTGCCGAA
CGAGCTGCTAATTTTTTTATGCATAAAGCTTTTTATTTTAAGGacaattt
tttattatatttccaATAAATCATAAAAGTATGGGATCTTTTTTTCATTG
TCTCGTAAAAGTTTGAATATTAGAAGGATGAGAATAGTAAAACTCAAAAT
CCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_026945	XLOC_026945	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0004034	supercontig	sc0004034:4329..7781 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.201024	0.0551569	1.34154	0	0	0.466784	0	0	0	0.411828	0.121089	0.913272	0	0	2.17003	0	0	0.0267499	0.230262	0	0	0.142837	0	0	0.452695	0.0655547

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00043229 vs. Swiss-Prot (Human)

BLAST of TCONS_00043229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00043229 (transcript) - C. hemisphaerica