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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043245 ID=TCONS_00043245|Name=TCONS_00043245|organism=Clytia hemisphaerica|type=transcript|length=1928bp
tttcaacaaAGCTctaaagcaatttttttttcatatattcatagtatatt
cttaaaatatcaatgaaataatcaatgaatgagacaaaataaaaagatta
aatTCATGACATATGCGTAAATAAGATTgtgtaaagtctgtctcaaaata
atttgcagctgagacaaaaatggctgtaacttttgatagaattcgattca
agttgcgattttgtgctcgttgaaaagatatttgtcagtggaatattatc
aagcaaaaaaaaattgaaaaaaacataaaatgaaaatgaaaaatgaagaa
aaaaaaaataaacttcttgtagaaatgtggtataactACCATTTTAACAG
GAGTGAtttttcaatcttagatcatcatcatcaCACCAcccagaaaattg
ccaaaaattatcaaaactcGACCCAGTCAGATAGACATCTTGAAAATCAG
TAAATTtaagaccctgtcagatatcttcagagcctaaaaacgGGAACCtg
ccagcggcacgtccccgtacccaattttgcctaagtgtcCCCCCTCCCGG
GGAGAGGTAATCAGCCTTACGCATGTCATGAACAGGGACCATTATATTGT
TAGTCttgaaataaagaataaaacGAGACCTAACAAAAGtttcttcttaa
aaaattataaatggGTGACATAATCTTCATATTGTTTTTTGGTCCAGTTA
TCCGTATGGGATTTACCTTTCACTGCTGATGTCAAACCTTCGTATTTTGC
AGGCATCAATCGCATGGAAATTGTTGGTTTGTGGCTGCTCCCCATCTCAC
CTACGAAACACATATCTCCCAAACAAGCTTTAACTGATCGAATAGTGCGA
TAGTATTCGTGGCGATCCATGGCAACTCTGGGAATGTCTGTCGATTCCCT
TGATTCATCGCTCAACGAGTCAAGATAACGATTAACTACATCGACGTATT
CTAAGCGGATATGATAGAGATCATTGCCATGCATTTTGCCACAAGCACTT
TTGTCGAGCTCACAAATAGAGACAGTGAGATAGTTGGAGAAGAAATCTTG
GTTGTATGGGACTGAATACATAAACATGACACGATATTTACCATTAACTC
TGAATGGGCAGAAGATTTGAGTTCCTGTAGCTGAGTGACCAGTTTTATGT
GATGCAAAGGCTTCTTTGTATCCAGGGCTGATTGATCGCATTGGTTTATT
CACTGTTCCACCCATCACATCACAACCATTACGTTCTAGATGCATTGCCC
ATTTAGAGTAATTCTCTATTGATCCAGCAGCTGCAACACTATAACCTGGT
GCCATCATTGCGCTAACAGTAGTTCCAGCAAGGGAAGTACCAGTTGAGAT
TGCAGAGCTGATCATTGCTGTGGTGAACGCAGATACCGGCTCCACAACAC
GTTTCCCAGCTTTCTCCGAGGCTGATTCAACTTCATTTTCGTTTTCACCT
TCGTCTTCTGGTATTGGATTTTGAATGTCAGCGTTTACAGGAACGTTGTA
AGGACTAGCCTGTGAAGTAGCAACGTTGGTCAATTGTTGGAAGTTGTTGT
TGTCTTCTGATTCTGGAGGAGATCCCTTCAAATGTTCATCTTCAGTGGTT
GGTAGGTCAGCTTTCTTCTTATGATGTTTGGGTTTACCAAGAACATTTGT
GGCTAAAAGTAGCCCAAAAATCACGACGGTACAGAACAATTTCATTATGA
TACAGTTCCTTCAGCTTCTTTGTTCGTCTGTTTattatttccagaaaaat
tattataattataCTCCTCGCTTAATACCTGCTGTCTTTAGTGtcaagaa
gaaattttttgcaaaatctcaAACAAATAATACATTTTAATGTTTATAAA
GAGCTAATGAAACGATTTAAGCCAATCAGCGAAAGGTTTATTGAAAAGTT
CAATTTGCCAGTAGCACTGGTATAATCA Run BLAST on NCBI protein sequence of TCONS_00043245-protein >TCONS_00043245-protein ID=TCONS_00043245-protein|Name=TCONS_00043245-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp
MKLFCTVVIFGLLLATNVLGKPKHHKKKADLPTTEDEHLKGSPPESEDNN
NFQQLTNVATSQASPYNVPVNADIQNPIPEDEGENENEVESASEKAGKRV
VEPVSAFTTAMISSAISTGTSLAGTTVSAMMAPGYSVAAAGSIENYSKWA
MHLERNGCDVMGGTVNKPMRSISPGYKEAFASHKTGHSATGTQIFCPFRV
NGKYRVMFMYSVPYNQDFFSNYLTVSICELDKSACGKMHGNDLYHIRLEY
VDVVNRYLDSLSDESRESTDIPRVAMDRHEYYRTIRSVKACLGDMCFVGE
MGSSHKPTISMRLMPAKYEGLTSAVKGKSHTDNWTKKQYEDYVTHL Run BLAST on NCBI transcript from alignment at sc0004060:1325..3252 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043245 ID=TCONS_00043245|Name=TCONS_00043245|organism=Clytia hemisphaerica|type=transcript|length=1928bp|location=Sequence derived from alignment at sc0004060:1325..3252 (Clytia hemisphaerica)
TGATTATACCAGTGCTACTGGCAAATTGAACTTTTCAATAAACCTTTCGC
TGATTGGCTTAAATCGTTTCATTAGCTCTTTATAAACATTAAAATGTATT
ATTTGTTtgagattttgcaaaaaatttcttcttgaCACTAAAGACAGCAG
GTATTAAGCGAGGAGtataattataataatttttctggaaataatAAACA
GACGAACAAAGAAGCTGAAGGAACTGTATCATAATGAAATTGTTCTGTAC
CGTCGTGATTTTTGGGCTACTTTTAGCCACAAATGTTCTTGGTAAACCCA
AACATCATAAGAAGAAAGCTGACCTACCAACCACTGAAGATGAACATTTG
AAGGGATCTCCTCCAGAATCAGAAGACAACAACAACTTCCAACAATTGAC
CAACGTTGCTACTTCACAGGCTAGTCCTTACAACGTTCCTGTAAACGCTG
ACATTCAAAATCCAATACCAGAAGACGAAGGTGAAAACGAAAATGAAGTT
GAATCAGCCTCGGAGAAAGCTGGGAAACGTGTTGTGGAGCCGGTATCTGC
GTTCACCACAGCAATGATCAGCTCTGCAATCTCAACTGGTACTTCCCTTG
CTGGAACTACTGTTAGCGCAATGATGGCACCAGGTTATAGTGTTGCAGCT
GCTGGATCAATAGAGAATTACTCTAAATGGGCAATGCATCTAGAACGTAA
TGGTTGTGATGTGATGGGTGGAACAGTGAATAAACCAATGCGATCAATCA
GCCCTGGATACAAAGAAGCCTTTGCATCACATAAAACTGGTCACTCAGCT
ACAGGAACTCAAATCTTCTGCCCATTCAGAGTTAATGGTAAATATCGTGT
CATGTTTATGTATTCAGTCCCATACAACCAAGATTTCTTCTCCAACTATC
TCACTGTCTCTATTTGTGAGCTCGACAAAAGTGCTTGTGGCAAAATGCAT
GGCAATGATCTCTATCATATCCGCTTAGAATACGTCGATGTAGTTAATCG
TTATCTTGACTCGTTGAGCGATGAATCAAGGGAATCGACAGACATTCCCA
GAGTTGCCATGGATCGCCACGAATACTATCGCACTATTCGATCAGTTAAA
GCTTGTTTGGGAGATATGTGTTTCGTAGGTGAGATGGGGAGCAGCCACAA
ACCAACAATTTCCATGCGATTGATGCCTGCAAAATACGAAGGTTTGACAT
CAGCAGTGAAAGGTAAATCCCATACGGATAACTGGACCAAAAAACAATAT
GAAGATTATGTCACccatttataattttttaagaagaaaCTTTTGTTAGG
TCTCgttttattctttatttcaaGACTAACAATATAATGGTCCCTGTTCA
TGACATGCGTAAGGCTGATTACCTCTCCCCGGGAGGGGGgacacttaggc
aaaattgggtacggggacgtgccgctggcaGGTTCCcgtttttaggctct
gaagatatctgacagggtcttaAATTTACTGATTTTCAAGATGTCTATCT
GACTGGGTCgagttttgataatttttggcaattttctgggTGGTGtgatg
atgatgatctaagattgaaaaaTCACTCCTGTTAAAATGGTagttatacc
acatttctacaagaagtttattttttttttcttcatttttcattttcatt
ttatgtttttttcaatttttttttgcttgataatattccactgacaaata
tcttttcaacgagcacaaaatcgcaacttgaatcgaattctatcaaaagt
tacagccatttttgtctcagctgcaaattattttgagacagactttacac
AATCTTATTTACGCATATGTCATGAatttaatctttttattttgtctcat
tcattgattatttcattgatattttaagaatatactatgaatatatgaaa
aaaaaattgctttagAGCTttgttgaaa Coding sequence (CDS) from alignment at sc0004060:1325..3252 >TCONS_00043245 ID=TCONS_00043245|Name=TCONS_00043245|organism=Clytia hemisphaerica|type=CDS|length=1041bp|location=Sequence derived from alignment at sc0004060:1325..3252 (Clytia hemisphaerica)
ATGAAATTGTTCTGTACCGTCGTGATTTTTGGGCTACTTTTAGCCACAAA
TGTTCTTGGTAAACCCAAACATCATAAGAAGAAAGCTGACCTACCAACCA
CTGAAGATGAACATTTGAAGGGATCTCCTCCAGAATCAGAAGACAACAAC
AACTTCCAACAATTGACCAACGTTGCTACTTCACAGGCTAGTCCTTACAA
CGTTCCTGTAAACGCTGACATTCAAAATCCAATACCAGAAGACGAAGGTG
AAAACGAAAATGAAGTTGAATCAGCCTCGGAGAAAGCTGGGAAACGTGTT
GTGGAGCCGGTATCTGCGTTCACCACAGCAATGATCAGCTCTGCAATCTC
AACTGGTACTTCCCTTGCTGGAACTACTGTTAGCGCAATGATGGCACCAG
GTTATAGTGTTGCAGCTGCTGGATCAATAGAGAATTACTCTAAATGGGCA
ATGCATCTAGAACGTAATGGTTGTGATGTGATGGGTGGAACAGTGAATAA
ACCAATGCGATCAATCAGCCCTGGATACAAAGAAGCCTTTGCATCACATA
AAACTGGTCACTCAGCTACAGGAACTCAAATCTTCTGCCCATTCAGAGTT
AATGGTAAATATCGTGTCATGTTTATGTATTCAGTCCCATACAACCAAGA
TTTCTTCTCCAACTATCTCACTGTCTCTATTTGTGAGCTCGACAAAAGTG
CTTGTGGCAAAATGCATGGCAATGATCTCTATCATATCCGCTTAGAATAC
GTCGATGTAGTTAATCGTTATCTTGACTCGTTGAGCGATGAATCAAGGGA
ATCGACAGACATTCCCAGAGTTGCCATGGATCGCCACGAATACTATCGCA
CTATTCGATCAGTTAAAGCTTGTTTGGGAGATATGTGTTTCGTAGGTGAG
ATGGGGAGCAGCCACAAACCAACAATTTCCATGCGATTGATGCCTGCAAA
ATACGAAGGTTTGACATCAGCAGTGAAAGGTAAATCCCATACGGATAACT
GGACCAAAAAACAATATGAAGATTATGTCACccatttataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043245-exon-sc0004060-1491911889:1325..3252 | TCONS_00043245-exon-sc0004060-1491911889:1325..3252 | Clytia hemisphaerica | exon |
| TCONS_00043245-exon-sc0004060-1510915933:1325..3252 | TCONS_00043245-exon-sc0004060-1510915933:1325..3252 | Clytia hemisphaerica | exon |
| TCONS_00043245-exon-sc0004060-1575043694:1325..3252 | TCONS_00043245-exon-sc0004060-1575043694:1325..3252 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004060 | supercontig | sc0004060:1325..3252 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015926 | Cytolysin/lectin |
Blast
The following BLAST results are available for this feature:
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