TCONS_00043264 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043264
Unique NameTCONS_00043264
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043264 ID=TCONS_00043264|Name=TCONS_00043264|organism=Clytia hemisphaerica|type=transcript|length=470bp
ATTTCCAAGCCTCGAACGCCCAGGTGTAAAGGGATTACGGGAGATCCTTG
GTACTGGTTCAAAAGGGTTTGTGTTGTTCATCTTGGGTCTGGTACCGGGG
TCCAATACTTTAGTTTGGGTAGCCATGGAGGACTGTCGTGGCTTTGACGA
AAATAAAGGTGTTGCAAAGGGGTCAATCGATTCAAATGGGTCCTGGAAGT
CTTCAACTGGGATGTCAGCCAGTGGGTCAGGTCTCCCCCTCAGGATCTTT
TTGGCTCGTTGGAACTCTGCCATCCCCCCATCCTGTTGactttccaaaat
ttcagagTTCAAATAGCGTAAAACAAAACGACGTAATTCAAATTCCTTAC
CCCTTGCCCTTTCAGTGAACTTGATGTCCAGTGCGGTGGCGATGGACCAC
AATGTCTCCACATCTGCTTCAGCCACACCCCTCAAGACTTCATGCACGAC
AGATTCCATGATGGTTGCNN
Run BLAST on NCBI

protein sequence of TCONS_00043264-protein

>TCONS_00043264-protein ID=TCONS_00043264-protein|Name=TCONS_00043264-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
ATIMESVVHEVLRGVAEADVETLWSIATALDIKFTERARGKEFELRRFVL
RYLNSEILESQQDGGMAEFQRAKKILRGRPDPLADIPVEDFQDPFESIDP
FATPLFSSKPRQSSMATQTKVLDPGTRPKMNNTNPFEPVPRISRNPFTPG
RSRLGN
Run BLAST on NCBI

transcript from alignment at sc0004075:7974..8443

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043264 ID=TCONS_00043264|Name=TCONS_00043264|organism=Clytia hemisphaerica|type=transcript|length=470bp|location=Sequence derived from alignment at sc0004075:7974..8443 (Clytia hemisphaerica)
NNGCAACCATCATGGAATCTGTCGTGCATGAAGTCTTGAGGGGTGTGGCT
GAAGCAGATGTGGAGACATTGTGGTCCATCGCCACCGCACTGGACATCAA
GTTCACTGAAAGGGCAAGGGGTAAGGAATTTGAATTACGTCGTTTTGTTT
TACGCTATTTGAActctgaaattttggaaagtCAACAGGATGGGGGGATG
GCAGAGTTCCAACGAGCCAAAAAGATCCTGAGGGGGAGACCTGACCCACT
GGCTGACATCCCAGTTGAAGACTTCCAGGACCCATTTGAATCGATTGACC
CCTTTGCAACACCTTTATTTTCGTCAAAGCCACGACAGTCCTCCATGGCT
ACCCAAACTAAAGTATTGGACCCCGGTACCAGACCCAAGATGAACAACAC
AAACCCTTTTGAACCAGTACCAAGGATCTCCCGTAATCCCTTTACACCTG
GGCGTTCGAGGCTTGGAAAT

Coding sequence (CDS) from alignment at sc0004075:7974..8443

>TCONS_00043264 ID=TCONS_00043264|Name=TCONS_00043264|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at sc0004075:7974..8443 (Clytia hemisphaerica)
GCAACCATCATGGAATCTGTCGTGCATGAAGTCTTGAGGGGTGTGGCTGA
AGCAGATGTGGAGACATTGTGGTCCATCGCCACCGCACTGGACATCAAGT
TCACTGAAAGGGCAAGGGGTAAGGAATTTGAATTACGTCGTTTTGTTTTA
CGCTATTTGAActctgaaattttggaaagtCAACAGGATGGGGGGATGGC
AGAGTTCCAACGAGCCAAAAAGATCCTGAGGGGGAGACCTGACCCACTGG
CTGACATCCCAGTTGAAGACTTCCAGGACCCATTTGAATCGATTGACCCC
TTTGCAACACCTTTATTTTCGTCAAAGCCACGACAGTCCTCCATGGCTAC
CCAAACTAAAGTATTGGACCCCGGTACCAGACCCAAGATGAACAACACAA
ACCCTTTTGAACCAGTACCAAGGATCTCCCGTAATCCCTTTACACCTGGG
CGTTCGAGGCTTGGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026977XLOC_026977Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043264-exon-sc0004075-1491911889:7974..8443TCONS_00043264-exon-sc0004075-1491911889:7974..8443Clytia hemisphaericaexon
TCONS_00043264-exon-sc0004075-1510915933:7974..8443TCONS_00043264-exon-sc0004075-1510915933:7974..8443Clytia hemisphaericaexon
TCONS_00043264-exon-sc0004075-1575043694:7974..8443TCONS_00043264-exon-sc0004075-1575043694:7974..8443Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043264-proteinTCONS_00043264-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004075supercontigsc0004075:7974..8443 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.2944	9.18748	9.45038	9.24593	33.5471	29.564	17.1333	18.3425	9.00586	14.795	13.9554	10.8145	8.98266	8.2382	7.31471	8.72673	5.64343	6.93872	13.2685	10.2627	13.9216	16.2196	14.966	16.2192	5.66004	7.56415	30.0121	28.4528	26.8285	26.9071
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043264 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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