TCONS_00043266 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043266
Unique NameTCONS_00043266
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length984

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043266 ID=TCONS_00043266|Name=TCONS_00043266|organism=Clytia hemisphaerica|type=transcript|length=984bp
TGTTGAGCGTGCAAAACATACATCTACTTTGTTTGCTTATTCAAGATGGC
GGAGGCAGGCGAAGAAAACGAAGCACATGTGCAAGCGAAATTGGTGACGA
AATTGAAGAAATTCCAAACGCAAGATGCCCCGTTTTCGTTGCCGATCCAT
ACAGGAAGTAACGAATTGAATTCTTTGTTAACATCTCTGCTTCAGGGAGA
AGAAAGCAAAGAGGAAACACTCAATTTCGACTTTCTTATCAATGGGGAAT
TTTTGAgatcaaatttgaaagattttattgAAGCCAACAATCTCTTAACT
GAATCAGAAATAGAAATCGAATACATTCTCAAGGAAGATGAGCCTGAGCT
GTCACAAACTTTACAACATGATGATTGGATTAGTGGGATTGATATAAACA
ataatgatttgattttgaccGCTTCTTACGACAACACCCTTTCAATATGG
AATTTGAGTGGAGAATGCATTTTCAACATTGAGGGACATGGAATGGCAGT
CAAAGATGCTTGCTGGATAAATGATAAGACATTTATTTCAGCCTCTCAGG
ATCAAACTATTCTTATGTGGGAGTTGAATAATGTTAATAAGACAGCACCT
GATTGTGTGAATGTTTGTAGGGGACATGCAGCCAGTGTTGATTGCTTGGC
TATCAGtcaaaacaaattgaaatttgcTAGTGGTTCATGGgataaaatga
ttaaaatttgGGATAGTAAAGTTGATAGATCGTTAGTTGAGAATGGTGTA
GATGAAGAAGATCCAAAAAAGCAGAAATTATCTGATAAATTGAAAGCTGC
GCCAACAAGTCGAACCCCACTTGTCACTCTTTCTGGTCATAAGGAGCCGG
TTTCAGATTTATTCTGGAAAACAAATGAGGAGCTTGTGAGCGTTGGCTGG
GATCATTGTATAAGAATGTGGGATGTAAACACAGGGATTAATTCACAAAC
AATCCAAGCAAATAAAGTCATTCTATCCACTGNN
Run BLAST on NCBI

protein sequence of TCONS_00043266-protein

>TCONS_00043266-protein ID=TCONS_00043266-protein|Name=TCONS_00043266-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MAEAGEENEAHVQAKLVTKLKKFQTQDAPFSLPIHTGSNELNSLLTSLLQ
GEESKEETLNFDFLINGEFLRSNLKDFIEANNLLTESEIEIEYILKEDEP
ELSQTLQHDDWISGIDINNNDLILTASYDNTLSIWNLSGECIFNIEGHGM
AVKDACWINDKTFISASQDQTILMWELNNVNKTAPDCVNVCRGHAASVDC
LAISQNKLKFASGSWDKMIKIWDSKVDRSLVENGVDEEDPKKQKLSDKLK
AAPTSRTPLVTLSGHKEPVSDLFWKTNEELVSVGWDHCIRMWDVNTGINS
QTIQANKVILSTX
Run BLAST on NCBI

transcript from alignment at sc0004077:4208..5247+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043266 ID=TCONS_00043266|Name=TCONS_00043266|organism=Clytia hemisphaerica|type=transcript|length=1040bp|location=Sequence derived from alignment at sc0004077:4208..5247+ (Clytia hemisphaerica)
TGTTGAGCGTGCAAAACATACATCTACTTTGTTTGCTTATTCAAGATGGC
GGAGGCAGGCGAAGAAAACGAAGCACATGTGCAAGCGAAATTGGTGACGA
AATTGAAGAAATTCCAAACGCAAGATGCCCCGTTTTCGTTGCCGATCCAT
ACAGGAAGTAACGAATTGAATTCTTTGTTAACATCTCTGCTTCAGGGAGA
AGAAAGCAAAGGGGAAACACTCAATTTCGACTTTANACATCTCTGCTTCA
GGGAGAAGAAAGCAAAGAGGAAACACTCAATTTCGACTTTCTTATCAATG
GGGAATTTTTGAgatcaaatttgaaagattttattgAAGCCAACAATCTC
TTAACTGAATCAGAAATAGAAATCGAATACATTCTCAAGGAAGATGAGCC
TGAGCTGTCACAAACTTTACAACATGATGATTGGATTAGTGGGATTGATA
TAAACAataatgatttgattttgaccGCTTCTTACGACAACACCCTTTCA
ATATGGAATTTGAGTGGAGAATGCATTTTCAACATTGAGGGACATGGAAT
GGCAGTCAAAGATGCTTGCTGGATAAATGATAAGACATTTATTTCAGCCT
CTCAGGATCAAACTATTCTTATGTGGGAGTTGAATAATGTTAATAAGACA
GCACCTGATTGTGTGAATGTTTGTAGGGGACATGCAGCCAGTGTTGATTG
CTTGGCTATCAGtcaaaacaaattgaaatttgcTAGTGGTTCATGGgata
aaatgattaaaatttgGGATAGTAAAGTTGATAGATCGTTAGTTGAGAAT
GGTGTAGATGAAGAAGATCCAAAAAAGCAGAAATTATCTGATAAATTGAA
AGCTGCGCCAACAAGTCGAACCCCACTTGTCACTCTTTCTGGTCATAAGG
AGCCGGTTTCAGATTTATTCTGGAAAACAAATGAGGAGCTTGTGAGCGTT
GGCTGGGATCATTGTATAAGAATGTGGGATGTAAACACAGGGATTAATTC
ACAAACAATCCAAGCAAATAAAGTCATTCTATCCACTGNN

Coding sequence (CDS) from alignment at sc0004077:4208..5247+

>TCONS_00043266 ID=TCONS_00043266|Name=TCONS_00043266|organism=Clytia hemisphaerica|type=CDS|length=1878bp|location=Sequence derived from alignment at sc0004077:4208..5247+ (Clytia hemisphaerica)
ATGGCGGAGGCAGGCGAAGAAAACGAAGCACATGTGCAAGCGAAATTGGT
GACGAAATTGAAGAAATTCCAAACGCAAGATGCCCCGTTTTCGTTGCCGA
TCCATACAGGAAGTAACGAATTGAATTCTTTGTTAACATCTCTGCTTCAG
GGAGAAGAAAGCAAAGAGGAAACACTCAATTTCGACTTTCTTATCAATGG
GGAATTTTTGAgatcaaatttgaaagattttattgAAGCCAACAATCTCT
TAACTGAATCAGAAATAGAAATCGAATACATTCTCAAGGAAGATGAGCCT
GAGCTGTCACAAACTTTACAACATGATGATTGGATTAGTGGGATTGATAT
AAACAataatgatttgattttgaccGCTTCTTACGACAACACCCTTTCAA
TATGGAATTTGAGTGGAGAATGCATTTTCAACATTGAGGGACATGGAATG
GCAGTCAAAGATGCTTGCTGGATAAATGATAAGACATTTATTTCAGCCTC
TCAGGATCAAACTATTCTTATGTGGGAGTTGAATAATGTTAATAAGACAG
CACCTGATTGTGTGAATGTTTGTAGGGGACATGCAGCCAGTGTTGATTGC
TTGGCTATCAGtcaaaacaaattgaaatttgcTAGTGGTTCATGGgataa
aatgattaaaatttgGGATAGTAAAGTTGATAGATCGTTAGTTGAGAATG
GTGTAGATGAAGAAGATCCAAAAAAGCAGAAATTATCTGATAAATTGAAA
GCTGCGCCAACAAGTCGAACCCCACTTGTCACTCTTTCTGGTCATAAGGA
GCCGGTTTCAGATTTATTCTGGAAAACAAATGAGGAGCTTGTGAGCGTTG
GCTGGGATCATTGTATAAGAATGTGGGATGTAAACACAGGGATTAATTCA
CAAACAATCCAAGCAAATAAAGTCATTCTATCCACTGNNATGGCGGAGGC
AGGCGAAGAAAACGAAGCACATGTGCAAGCGAAATTGGTGACGAAATTGA
AGAAATTCCAAACGCAAGATGCCCCGTTTTCGTTGCCGATCCATACAGGA
AGTAACGAATTGAATTCTTTGTTAACATCTCTGCTTCAGGGAGAAGAAAG
CAAAGAGGAAACACTCAATTTCGACTTTCTTATCAATGGGGAATTTTTGA
gatcaaatttgaaagattttattgAAGCCAACAATCTCTTAACTGAATCA
GAAATAGAAATCGAATACATTCTCAAGGAAGATGAGCCTGAGCTGTCACA
AACTTTACAACATGATGATTGGATTAGTGGGATTGATATAAACAataatg
atttgattttgaccGCTTCTTACGACAACACCCTTTCAATATGGAATTTG
AGTGGAGAATGCATTTTCAACATTGAGGGACATGGAATGGCAGTCAAAGA
TGCTTGCTGGATAAATGATAAGACATTTATTTCAGCCTCTCAGGATCAAA
CTATTCTTATGTGGGAGTTGAATAATGTTAATAAGACAGCACCTGATTGT
GTGAATGTTTGTAGGGGACATGCAGCCAGTGTTGATTGCTTGGCTATCAG
tcaaaacaaattgaaatttgcTAGTGGTTCATGGgataaaatgattaaaa
tttgGGATAGTAAAGTTGATAGATCGTTAGTTGAGAATGGTGTAGATGAA
GAAGATCCAAAAAAGCAGAAATTATCTGATAAATTGAAAGCTGCGCCAAC
AAGTCGAACCCCACTTGTCACTCTTTCTGGTCATAAGGAGCCGGTTTCAG
ATTTATTCTGGAAAACAAATGAGGAGCTTGTGAGCGTTGGCTGGGATCAT
TGTATAAGAATGTGGGATGTAAACACAGGGATTAATTCACAAACAATCCA
AGCAAATAAAGTCATTCTATCCACTGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026979XLOC_026979Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043266-proteinTCONS_00043266-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043266-exon-sc0004077-1491911889:4208..4389TCONS_00043266-exon-sc0004077-1491911889:4208..4389Clytia hemisphaericaexon
TCONS_00043266-exon-sc0004077-1510915933:4208..4389TCONS_00043266-exon-sc0004077-1510915933:4208..4389Clytia hemisphaericaexon
TCONS_00043266-exon-sc0004077-1575043694:4208..4389TCONS_00043266-exon-sc0004077-1575043694:4208..4389Clytia hemisphaericaexon
TCONS_00043266-exon-sc0004077-1491911889:4446..5247TCONS_00043266-exon-sc0004077-1491911889:4446..5247Clytia hemisphaericaexon
TCONS_00043266-exon-sc0004077-1510915933:4446..5247TCONS_00043266-exon-sc0004077-1510915933:4446..5247Clytia hemisphaericaexon
TCONS_00043266-exon-sc0004077-1575043694:4446..5247TCONS_00043266-exon-sc0004077-1575043694:4446..5247Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004077supercontigsc0004077:4208..5247 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
96.4995	95.9324	35.7122	30.9835	166.558	135.373	92.225	118.793	70.2083	67.1824	48.9298	49.3901	60.7993	70.2863	45.2557	49.4311	50.7917	42.6201	7.39674	7.33278	43.4638	40.6084	88.547	74.2986	61.4369	100.494	21.7813	19.2932	56.5004	76.8223
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR012972NLE
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00043266 vs. Swiss-Prot (Human)
Match: WDR12 (Ribosome biogenesis protein WDR12 OS=Homo sapiens GN=WDR12 PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 2.012e-59
Identity = 128/312 (41.03%), Postives = 177/312 (56.73%), Query Frame = 1 
Query:   73 AHVQAKLVTKLKKFQTQDAPFSLPIHXXXXXXXXXXXXXXXXXESKEETLNFDFLINGEFLRSNLKDFIEANNLLTESEIEIEYILKEDEPELSQTLQHDDWISGIDINNNDLILTASYDNTLSIWNLSGECIFNIEGHGMAVKDACWIND----KTFISASQDQTILMWELNNVNKTAPDCVNVCRGHAASVDCLAISQNKLKFASGSWDKMIKIWDSKVDRSLVENGVDEED--------PKKQKLSDKLKAAPTSRTPLVTLSGHKEPVSDLFWKTNEELVSVGWDHCIRMWDVNTGINSQTIQANKVI 972
            A +Q +  T  KK+   D PFS+P  +   +L++++  LL+ +    + + FDFLI G+FLR  L   +E  N+ +E  +EIEY+ K   P+  Q + HDDWIS I     + ILT SYD T  IW+L G+ I  I GH   VKD  W+         +SAS DQTIL+WE N V +     ++ CRGHA SVD +A+  +  KF SGSWDKM+KIW +           DEED        P+K++ +++L     +RTP+VTLSGH E VS + W   EE+ S  WDH IR+WDV +G    T+  NKV 
Sbjct:    2 AQLQTRFYTDNKKYAVDDVPFSIPAASEIADLSNIINKLLKDKNEFHKHVEFDFLIKGQFLRMPLDKHMEMENISSEEVVEIEYVEKYTAPQPEQCMFHDDWISSIK-GAEEWILTGSYDKTSRIWSLEGKSIMTIVGHTDVVKDVAWVKKDSLSCLLLSASMDQTILLWEWN-VERNKVKALHCCRGHAGSVDSIAVDGSGTKFCSGSWDKMLKIWSTV--------PTDEEDEMEESTNRPRKKQKTEQLGL---TRTPIVTLSGHMEAVSSVLWSDAEEICSASWDHTIRVWDVESGSLKSTLTGNKVF 300
The following BLAST results are available for this feature:
BLAST of TCONS_00043266 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR122.012e-5941.03Ribosome biogenesis protein WDR12 OS=Homo sapiens ... [more]
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