TCONS_00043268 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043268
Unique NameTCONS_00043268
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043268 ID=TCONS_00043268|Name=TCONS_00043268|organism=Clytia hemisphaerica|type=transcript|length=509bp
NNTTTGCCAGTACTGTCTCATCCGTCAAAATACCGAAGTCAGGCTTAAAG
TTAAAAGCCAACTCAAGTAAAGTCGTTGAATGTAAGATAAATAACATTAC
TCTTGAGACGAGACAAGCTGCAATTTTTGAACCTTCGTTCGATATACCAG
AAGAAATCGAGATCCAAGAGGAACTTATAAGGCTAAAGAAGGGTCCACAG
TCACGAATTCGATTAAAGATAACTAACAACGTCAATCGTCCAGTTATGGT
CCCAGGTCGTTTACACCTAGGATCCATCCAGCTTTTAAACTCTGTCATGC
CAATCGAGGTTGATTTCAAAGGAAATGATCAATCTACACCAGATCAACCA
GCTGACGAAGTTCCAACCAAATTAcccgaaattccagagaactgtGAGGA
CACTTTTGTGAGTTCCGTTGATAAACTTAAACTAGGGAACTTAACTACCG
ATGAAAAGAATAAAGTTAGAACATTGTTGTACAAGCACCGTGAAGTATTT
GCCATCGAC
Run BLAST on NCBI

protein sequence of TCONS_00043268-protein

>TCONS_00043268-protein ID=TCONS_00043268-protein|Name=TCONS_00043268-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
FASTVSSVKIPKSGLKLKANSSKVVECKINNITLETRQAAIFEPSFDIPE
EIEIQEELIRLKKGPQSRIRLKITNNVNRPVMVPGRLHLGSIQLLNSVMP
IEVDFKGNDQSTPDQPADEVPTKLPEIPENCEDTFVSSVDKLKLGNLTTD
EKNKVRTLLYKHREVFAID
Run BLAST on NCBI

transcript from alignment at sc0004079:52..560

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043268 ID=TCONS_00043268|Name=TCONS_00043268|organism=Clytia hemisphaerica|type=transcript|length=509bp|location=Sequence derived from alignment at sc0004079:52..560 (Clytia hemisphaerica)
GTCGATGGCAAATACTTCACGGTGCTTGTACAACAATGTTCTAACTTTAT
TCTTTTCATCGGTAGTTAAGTTCCCTAGTTTAAGTTTATCAACGGAACTC
ACAAAAGTGTCCTCacagttctctggaatttcgggTAATTTGGTTGGAAC
TTCGTCAGCTGGTTGATCTGGTGTAGATTGATCATTTCCTTTGAAATCAA
CCTCGATTGGCATGACAGAGTTTAAAAGCTGGATGGATCCTAGGTGTAAA
CGACCTGGGACCATAACTGGACGATTGACGTTGTTAGTTATCTTTAATCG
AATTCGTGACTGTGGACCCTTCTTTAGCCTTATAAGTTCCTCTTGGATCT
CGATTTCTTCTGGTATATCGAACGAAGGTTCAAAAATTGCAGCTTGTCTC
GTCTCAAGAGTAATGTTATTTATCTTACATTCAACGACTTTACTTGAGTT
GGCTTTTAACTTTAAGCCTGACTTCGGTATTTTGACGGATGAGACAGTAC
TGGCAAANN

Coding sequence (CDS) from alignment at sc0004079:52..560

>TCONS_00043268 ID=TCONS_00043268|Name=TCONS_00043268|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at sc0004079:52..560 (Clytia hemisphaerica)
GTCGATGGCAAATACTTCACGGTGCTTGTACAACAATGTTCTAACTTTAT
TCTTTTCATCGGTAGTTAAGTTCCCTAGTTTAAGTTTATCAACGGAACTC
ACAAAAGTGTCCTCacagttctctggaatttcgggTAATTTGGTTGGAAC
TTCGTCAGCTGGTTGATCTGGTGTAGATTGATCATTTCCTTTGAAATCAA
CCTCGATTGGCATGACAGAGTTTAAAAGCTGGATGGATCCTAGGTGTAAA
CGACCTGGGACCATAACTGGACGATTGACGTTGTTAGTTATCTTTAATCG
AATTCGTGACTGTGGACCCTTCTTTAGCCTTATAAGTTCCTCTTGGATCT
CGATTTCTTCTGGTATATCGAACGAAGGTTCAAAAATTGCAGCTTGTCTC
GTCTCAAGAGTAATGTTATTTATCTTACATTCAACGACTTTACTTGAGTT
GGCTTTTAACTTTAAGCCTGACTTCGGTATTTTGACGGATGAGACAGTAC
TGGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026981XLOC_026981Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043268-exon-sc0004079-1491911889:52..560TCONS_00043268-exon-sc0004079-1491911889:52..560Clytia hemisphaericaexon
TCONS_00043268-exon-sc0004079-1510915933:52..560TCONS_00043268-exon-sc0004079-1510915933:52..560Clytia hemisphaericaexon
TCONS_00043268-exon-sc0004079-1575043694:52..560TCONS_00043268-exon-sc0004079-1575043694:52..560Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043268-proteinTCONS_00043268-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004079supercontigsc0004079:52..560 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.236518	0.345964	0.803394	0.785996	1.27583	1.38625	1.91048	0.996371	0.498274	1.23438	0	1.33892	0.865155	0.163359	0.268606	0.57651	0.26633	1.09192	2.13711	0.789292	0.343019	0.66925	0.271187	0.246549	1.2697	1.24649	0.648627	1.03835	0.131258	0.267463
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043268 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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