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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043269 ID=TCONS_00043269|Name=TCONS_00043269|organism=Clytia hemisphaerica|type=transcript|length=1142bp
GTTTCGTCGAATTTACAATTTCGTTACCAAAataaatcctcgccaaattt
agaaatttcattaTCTCGCCGAAATAAATTCCGCATGCGTAAGCCGTCGG
CagaaaagttgtgatttttttctgaagtgCAAAACCTCTATGGTAAAGAA
GGGGTTTAGGTAGAAAACTTATAAGATGGTAACTTCTCACCTTTTTGATT
AATGCCAACTTGGAAAACATAAGGCAGTCTGTGCGGATCACGGTCACTTA
AAACTTCATCAAATACCTCATAATAGGGACTCGTTTGAAGATCTCCCCCA
ATTTTAATGGTTGTTATGCTCTTTGGCCTTGTTGTATGCTTTctttaagt
ttttaatttttgttcggCATTGCTGAGCTGTCTTAATTTTCGGTCCACTT
TGGCTTATTGATTGTGCTATGTTGTTGTAAAATGCGTCATTCAAGATTTT
ACCGTAGTTGTTTCTCCAAATTGACACCAACATGTCAGATTCTCCGGCGG
TCCAGGTACAGCGTTCGCCCTGATGTGGTTCTTGCTGCCGTTCCTGCCTT
TTCTGAGAATTCATTTGTTGACCCTGTGTATTCagttgttgaaaaaatgt
ttggtTGGGAGCCTGATGCCTGTGACTTCCAATTAGTTGTGGATAAGAAT
GATTGTACACCCACTCTTCAAAAGAAGGAGGTCGAATATAGCCATATTTT
TGATGAAAGTATACCAAAAAATCTTGATATGCTGCTCTTTGATCCATCTT
CGAACATATGCATACATATGACACTTCAGTGAAAGAAATTGTCCTATTTA
TTGCTAATCCACTAAAACTTGCTCAGGGGCATGTATGAAGTTACAAAAGA
TTTTACGGTCAAAGCCTGATGTTGATGTGGGAATTAAAGCCCTCCTCTGA
AAAGAAACCATTATCGTGTTGCATgcttcttttcatttctttttaccAAC
TATAGAATTAACCTTTTCACAGTTTAACAACTATTTCATTAAGTATATTA
GCTTGATTTTgtcagtggaaaaacaccctCTGGTCGTGTTCAGatctgaa
agtttaagtttaatgtttaagtagtactttgttgatatgggaattcaatt
ataatcacttttcttttgtcatcatcgattggcgatctcgag Run BLAST on NCBI protein sequence of TCONS_00043269-protein >TCONS_00043269-protein ID=TCONS_00043269-protein|Name=TCONS_00043269-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MDQRAAYQDFLVYFHQKYGYIRPPSFEEWVYNHSYPQLIGSHRHQAPNQT
FFQQLNTQGQQMNSQKRQERQQEPHQGERCTWTAGESDMLVSIWRNNYGK
ILNDAFYNNIAQSISQSGPKIKTAQQCRTKIKNLKKAYNKAKEHNNH Run BLAST on NCBI transcript from alignment at sc0004079:4891..6032 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043269 ID=TCONS_00043269|Name=TCONS_00043269|organism=Clytia hemisphaerica|type=transcript|length=1142bp|location=Sequence derived from alignment at sc0004079:4891..6032 (Clytia hemisphaerica)
ctcgagatcgccaatcgatgatgacaaaagaaaagtgattataattgaat
tcccatatcaacaaagtactacttaaacattaaacttaaactttcagatC
TGAACACGACCAGagggtgtttttccactgacAAAATCAAGCTAATATAC
TTAATGAAATAGTTGTTAAACTGTGAAAAGGTTAATTCTATAGTTggtaa
aaagaaatgaaaagaagcATGCAACACGATAATGGTTTCTTTTCAGAGGA
GGGCTTTAATTCCCACATCAACATCAGGCTTTGACCGTAAAATCTTTTGT
AACTTCATACATGCCCCTGAGCAAGTTTTAGTGGATTAGCAATAAATAGG
ACAATTTCTTTCACTGAAGTGTCATATGTATGCATATGTTCGAAGATGGA
TCAAAGAGCAGCATATCAAGATTTTTTGGTATACTTTCATCAAAAATATG
GCTATATTCGACCTCCTTCTTTTGAAGAGTGGGTGTACAATCATTCTTAT
CCACAACTAATTGGAAGTCACAGGCATCAGGCTCCCAaccaaacattttt
tcaacaactGAATACACAGGGTCAACAAATGAATTCTCAGAAAAGGCAGG
AACGGCAGCAAGAACCACATCAGGGCGAACGCTGTACCTGGACCGCCGGA
GAATCTGACATGTTGGTGTCAATTTGGAGAAACAACTACGGTAAAATCTT
GAATGACGCATTTTACAACAACATAGCACAATCAATAAGCCAAAGTGGAC
CGAAAATTAAGACAGCTCAGCAATGccgaacaaaaattaaaaacttaaag
AAAGCATACAACAAGGCCAAAGAGCATAACAACCATTAAAATTGGGGGAG
ATCTTCAAACGAGTCCCTATTATGAGGTATTTGATGAAGTTTTAAGTGAC
CGTGATCCGCACAGACTGCCTTATGTTTTCCAAGTTGGCATTAATCAAAA
AGGTGAGAAGTTACCATCTTATAAGTTTTCTACCTAAACCCCTTCTTTAC
CATAGAGGTTTTGcacttcagaaaaaaatcacaacttttctGCCGACGGC
TTACGCATGCGGAATTTATTTCGGCGAGAtaatgaaatttctaaatttgg
cgaggatttatTTTGGTAACGAAATTGTAAATTCGACGAAAC Coding sequence (CDS) from alignment at sc0004079:4891..6032 >TCONS_00043269 ID=TCONS_00043269|Name=TCONS_00043269|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0004079:4891..6032 (Clytia hemisphaerica)
ATGGATCAAAGAGCAGCATATCAAGATTTTTTGGTATACTTTCATCAAAA
ATATGGCTATATTCGACCTCCTTCTTTTGAAGAGTGGGTGTACAATCATT
CTTATCCACAACTAATTGGAAGTCACAGGCATCAGGCTCCCAaccaaaca
ttttttcaacaactGAATACACAGGGTCAACAAATGAATTCTCAGAAAAG
GCAGGAACGGCAGCAAGAACCACATCAGGGCGAACGCTGTACCTGGACCG
CCGGAGAATCTGACATGTTGGTGTCAATTTGGAGAAACAACTACGGTAAA
ATCTTGAATGACGCATTTTACAACAACATAGCACAATCAATAAGCCAAAG
TGGACCGAAAATTAAGACAGCTCAGCAATGccgaacaaaaattaaaaact
taaagAAAGCATACAACAAGGCCAAAGAGCATAACAACCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043269-exon-sc0004079-1491911889:4891..6032 | TCONS_00043269-exon-sc0004079-1491911889:4891..6032 | Clytia hemisphaerica | exon |
| TCONS_00043269-exon-sc0004079-1510915933:4891..6032 | TCONS_00043269-exon-sc0004079-1510915933:4891..6032 | Clytia hemisphaerica | exon |
| TCONS_00043269-exon-sc0004079-1575043694:4891..6032 | TCONS_00043269-exon-sc0004079-1575043694:4891..6032 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004079 | supercontig | sc0004079:4891..6032 . |
Blast
The following BLAST results are available for this feature:
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