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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043273 ID=TCONS_00043273|Name=TCONS_00043273|organism=Clytia hemisphaerica|type=transcript|length=2061bp
GCAATATCTTCTATGTCGATGGGTACATTACAAATGGACCCTTTTAACTT
AGGAAACTGACCTTTTGGCATGATagcaatttttttgaataaaattcttT
GAGAAATTAAAACTTTCTCAAGCCTGCgaagagtatgaaattcagcTGGT
AATTCATAAATATCGAGCTTGTTTTTGACAGACTGGCATGGTAAGTTGTC
TTTTTTAAGTTTATTATGGCATGTCTTACAAATATACAATTGGCCATCAA
ATGAAATTACTTCAGAACAAAAGTTTTCTTCTGGCATATTGTAGTTTTCA
GGTGTATATTTGACAACAGTTTGTCGATAGAGACATCGGTTGCAACAAAC
ACATATATAAAAAGGACCTTCATTTACGAGAGTTTTAAATTTTGCTATTC
GCTCTTTCTGTCGAGAATTTGTTTCTTTTCGCTTTTCTTTGTTTCGTTCA
CGATaggcttttttgttttctttaattttgtCACTATTCTGGGTGCGGTa
agcttttttactttttttaattttttccttgttttggtTACGGTAGATTT
TATTGctgtcttttattttttcattgttttggacGCGGTAGACTTTTTGG
CTTTCTTTATTTAATGCACGATAATTATTTTGGTTTTCTTTcagaatttc
tttgtttttctcatAAAATTTATGATTGCTTTCCTGGCGTGTCTTTTGAc
gcttttttaaaacatttccaTCATCAGAATCATTTTTTCGCTTGATTGCA
CTTTTCTTTACAAAGCCAGAATAACTTCGCTGAAGAACCTTTTTAAAATC
TTCTTTTAGTTCACCTACTTTGATGAATTGAAtaaggaaaaataaattat
ctTTGTTATTTTCCTCtaaataaaaatgttgaatatatttttcaagttca
aaaatgTCTTCAAACTTTATAAGACAAGACTTTCCATTAAGTGGTTCAAG
TAGTCCAAATTCATTACGACTATGCGaatcaaaaaggaaaaatcCTTGAG
GCCTTCTCATAATTGCTATAGTAAAACCTTCAATGATCACCAATGCGTCA
AAGTCTGGATTTGGAGCCATGCTCAGAGGAATTTGAAGCAGAGGATAGTC
ATTGATCAATTTAGCTTGtccattttcagaatttaaaaaatgaagctCAG
TGACAATACCATTTGATTCAATGAAATGTGGCATTTCATCTACCGATAAA
TAACTATTTGTATTTAATTGTTTGTATAATTTGTCTCCTTCAATTAAAAT
TCTGTCTAGGTCAGTAGTTTTCCAAATAGAAACACGTCTAACATTGGACC
AGAATATAGCGTAGAGGCAGTTAGCACTACATTGCGTACCGGCTGTTTCA
CCAAACATCTCTCTGTTGGCTTGATTAAAAGAACCCAAAacagtttttga
aactttatatGCAGGCATGCTTGTCAAAAAGATGGAAACGATTTTAGCGG
TGTGGTCGTTGTGAAACTGACTCACAAAGAATGATCGATTTTGCAGGATG
TGCAAGTTAGATAAGTTGATACCGTTGAATTTCTTTAGTAGGATTAGTAG
GATTAGTTGGATTAGTAGGATTAGTAAGCTTAGCAAGAGGTTACAAGGAG
CTCGCATGTAACCTCTGGGGTGCTTGTCTGATATATAACACAGTTCTTTT
AGTGTTCTTTTAGTGATAACTAGCAAGTGAGATAAATTAATACCAGTATT
TACACTTGCAGCTATCTTTTTACACTAAAAATATGGTAATCAAAAACAAT
GAAAGCAAATTCTCACCCTTCTCTAGCAGAAAATTTGGCAAGAATATCGA
TTAGGTTTTCTCGTGACCAGCCAATGTTTACTTCACTAACTGATTTGTAC
TGGCAGTTTATTAGGAAGCTAACTTCATTTTCATCAACTTTTTTCTATCG
ATTGCTCAAGCAGGAGCGCACAATAAGGGAGATAAACAACACAATAAAGG
AGATAATATCTCGCGCTTTCGTTTTCTTCAGCAGATTTCCCGCTCTCCCG
AACATCCGATAGAAACCGAATCGGGAAATACTTTTTTGGAATCTTAACGC
CGTCCCCCCCA Run BLAST on NCBI protein sequence of TCONS_00043273-protein >TCONS_00043273-protein ID=TCONS_00043273-protein|Name=TCONS_00043273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=535bp
MRAPCNLLLSLLILLIQLILLILLKKFNGINLSNLHILQNRSFFVSQFHN
DHTAKIVSIFLTSMPAYKVSKTVLGSFNQANREMFGETAGTQCSANCLYA
IFWSNVRRVSIWKTTDLDRILIEGDKLYKQLNTNSYLSVDEMPHFIESNG
IVTELHFLNSENGQAKLINDYPLLQIPLSMAPNPDFDALVIIEGFTIAIM
RRPQGFFLFDSHSRNEFGLLEPLNGKSCLIKFEDIFELEKYIQHFYLEEN
NKDNLFFLIQFIKVGELKEDFKKVLQRSYSGFVKKSAIKRKNDSDDGNVL
KKRQKTRQESNHKFYEKNKEILKENQNNYRALNKESQKVYRVQNNEKIKD
SNKIYRNQNKEKIKKSKKAYRTQNSDKIKENKKAYRERNKEKRKETNSRQ
KERIAKFKTLVNEGPFYICVCCNRCLYRQTVVKYTPENYNMPEENFCSEV
ISFDGQLYICKTCHNKLKKDNLPCQSVKNKLDIYELPAEFHTLRRLEKVL
ISQRILFKKIAIMPKGQFPKLKGSICNVPIDIEDI Run BLAST on NCBI transcript from alignment at sc0004083:4466..6526 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043273 ID=TCONS_00043273|Name=TCONS_00043273|organism=Clytia hemisphaerica|type=transcript|length=2061bp|location=Sequence derived from alignment at sc0004083:4466..6526 (Clytia hemisphaerica)
TGGGGGGGACGGCGTTAAGATTCCAAAAAAGTATTTCCCGATTCGGTTTC
TATCGGATGTTCGGGAGAGCGGGAAATCTGCTGAAGAAAACGAAAGCGCG
AGATATTATCTCCTTTATTGTGTTGTTTATCTCCCTTATTGTGCGCTCCT
GCTTGAGCAATCGATAGAAAAAAGTTGATGAAAATGAAGTTAGCTTCCTA
ATAAACTGCCAGTACAAATCAGTTAGTGAAGTAAACATTGGCTGGTCACG
AGAAAACCTAATCGATATTCTTGCCAAATTTTCTGCTAGAGAAGGGTGAG
AATTTGCTTTCATTGTTTTTGATTACCATATTTTTAGTGTAAAAAGATAG
CTGCAAGTGTAAATACTGGTATTAATTTATCTCACTTGCTAGTTATCACT
AAAAGAACACTAAAAGAACTGTGTTATATATCAGACAAGCACCCCAGAGG
TTACATGCGAGCTCCTTGTAACCTCTTGCTAAGCTTACTAATCCTACTAA
TCCAACTAATCCTACTAATCCTACTAAAGAAATTCAACGGTATCAACTTA
TCTAACTTGCACATCCTGCAAAATCGATCATTCTTTGTGAGTCAGTTTCA
CAACGACCACACCGCTAAAATCGTTTCCATCTTTTTGACAAGCATGCCTG
CatataaagtttcaaaaactgtTTTGGGTTCTTTTAATCAAGCCAACAGA
GAGATGTTTGGTGAAACAGCCGGTACGCAATGTAGTGCTAACTGCCTCTA
CGCTATATTCTGGTCCAATGTTAGACGTGTTTCTATTTGGAAAACTACTG
ACCTAGACAGAATTTTAATTGAAGGAGACAAATTATACAAACAATTAAAT
ACAAATAGTTATTTATCGGTAGATGAAATGCCACATTTCATTGAATCAAA
TGGTATTGTCACTGagcttcattttttaaattctgaaaatggaCAAGCTA
AATTGATCAATGACTATCCTCTGCTTCAAATTCCTCTGAGCATGGCTCCA
AATCCAGACTTTGACGCATTGGTGATCATTGAAGGTTTTACTATAGCAAT
TATGAGAAGGCCTCAAGgatttttcctttttgattCGCATAGTCGTAATG
AATTTGGACTACTTGAACCACTTAATGGAAAGTCTTGTCTTATAAAGTTT
GAAGAcatttttgaacttgaaaaatatattcaacatttttatttaGAGGA
AAATAACAAagataatttatttttccttaTTCAATTCATCAAAGTAGGTG
AACTAAAAGAAGATTTTAAAAAGGTTCTTCAGCGAAGTTATTCTGGCTTT
GTAAAGAAAAGTGCAATCAAGCGAAAAAATGATTCTGATGAtggaaatgt
tttaaaaaagcgTCAAAAGACACGCCAGGAAAGCAATCATAAATTTTatg
agaaaaacaaagaaattctgAAAGAAAACCAAAATAATTATCGTGCATTA
AATAAAGAAAGCCAAAAAGTCTACCGCgtccaaaacaatgaaaaaataaa
agacagCAATAAAATCTACCGTAaccaaaacaaggaaaaaattaaaaaaa
gtaaaaaagcttACCGCACCCAGAATAGTGacaaaattaaagaaaacaaa
aaagcctATCGTGAACGAAACAAAGAAAAGCGAAAAGAAACAAATTCTCG
ACAGAAAGAGCGAATAGCAAAATTTAAAACTCTCGTAAATGAAGGTCCTT
TTTATATATGTGTTTGTTGCAACCGATGTCTCTATCGACAAACTGTTGTC
AAATATACACCTGAAAACTACAATATGCCAGAAGAAAACTTTTGTTCTGA
AGTAATTTCATTTGATGGCCAATTGTATATTTGTAAGACATGCCATAATA
AACTTAAAAAAGACAACTTACCATGCCAGTCTGTCAAAAACAAGCTCGAT
ATTTATGAATTACCAgctgaatttcatactcttcGCAGGCTTGAGAAAGT
TTTAATTTCTCAaagaattttattcaaaaaaattgctATCATGCCAAAAG
GTCAGTTTCCTAAGTTAAAAGGGTCCATTTGTAATGTACCCATCGACATA
GAAGATATTGC Coding sequence (CDS) from alignment at sc0004083:4466..6526 >TCONS_00043273 ID=TCONS_00043273|Name=TCONS_00043273|organism=Clytia hemisphaerica|type=CDS|length=1605bp|location=Sequence derived from alignment at sc0004083:4466..6526 (Clytia hemisphaerica)
ATGCGAGCTCCTTGTAACCTCTTGCTAAGCTTACTAATCCTACTAATCCA
ACTAATCCTACTAATCCTACTAAAGAAATTCAACGGTATCAACTTATCTA
ACTTGCACATCCTGCAAAATCGATCATTCTTTGTGAGTCAGTTTCACAAC
GACCACACCGCTAAAATCGTTTCCATCTTTTTGACAAGCATGCCTGCata
taaagtttcaaaaactgtTTTGGGTTCTTTTAATCAAGCCAACAGAGAGA
TGTTTGGTGAAACAGCCGGTACGCAATGTAGTGCTAACTGCCTCTACGCT
ATATTCTGGTCCAATGTTAGACGTGTTTCTATTTGGAAAACTACTGACCT
AGACAGAATTTTAATTGAAGGAGACAAATTATACAAACAATTAAATACAA
ATAGTTATTTATCGGTAGATGAAATGCCACATTTCATTGAATCAAATGGT
ATTGTCACTGagcttcattttttaaattctgaaaatggaCAAGCTAAATT
GATCAATGACTATCCTCTGCTTCAAATTCCTCTGAGCATGGCTCCAAATC
CAGACTTTGACGCATTGGTGATCATTGAAGGTTTTACTATAGCAATTATG
AGAAGGCCTCAAGgatttttcctttttgattCGCATAGTCGTAATGAATT
TGGACTACTTGAACCACTTAATGGAAAGTCTTGTCTTATAAAGTTTGAAG
AcatttttgaacttgaaaaatatattcaacatttttatttaGAGGAAAAT
AACAAagataatttatttttccttaTTCAATTCATCAAAGTAGGTGAACT
AAAAGAAGATTTTAAAAAGGTTCTTCAGCGAAGTTATTCTGGCTTTGTAA
AGAAAAGTGCAATCAAGCGAAAAAATGATTCTGATGAtggaaatgtttta
aaaaagcgTCAAAAGACACGCCAGGAAAGCAATCATAAATTTTatgagaa
aaacaaagaaattctgAAAGAAAACCAAAATAATTATCGTGCATTAAATA
AAGAAAGCCAAAAAGTCTACCGCgtccaaaacaatgaaaaaataaaagac
agCAATAAAATCTACCGTAaccaaaacaaggaaaaaattaaaaaaagtaa
aaaagcttACCGCACCCAGAATAGTGacaaaattaaagaaaacaaaaaag
cctATCGTGAACGAAACAAAGAAAAGCGAAAAGAAACAAATTCTCGACAG
AAAGAGCGAATAGCAAAATTTAAAACTCTCGTAAATGAAGGTCCTTTTTA
TATATGTGTTTGTTGCAACCGATGTCTCTATCGACAAACTGTTGTCAAAT
ATACACCTGAAAACTACAATATGCCAGAAGAAAACTTTTGTTCTGAAGTA
ATTTCATTTGATGGCCAATTGTATATTTGTAAGACATGCCATAATAAACT
TAAAAAAGACAACTTACCATGCCAGTCTGTCAAAAACAAGCTCGATATTT
ATGAATTACCAgctgaatttcatactcttcGCAGGCTTGAGAAAGTTTTA
ATTTCTCAaagaattttattcaaaaaaattgctATCATGCCAAAAGGTCA
GTTTCCTAAGTTAAAAGGGTCCATTTGTAATGTACCCATCGACATAGAAG
ATATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043273-exon-sc0004083-1491911889:4466..6526 | TCONS_00043273-exon-sc0004083-1491911889:4466..6526 | Clytia hemisphaerica | exon |
| TCONS_00043273-exon-sc0004083-1510915933:4466..6526 | TCONS_00043273-exon-sc0004083-1510915933:4466..6526 | Clytia hemisphaerica | exon |
| TCONS_00043273-exon-sc0004083-1575043694:4466..6526 | TCONS_00043273-exon-sc0004083-1575043694:4466..6526 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004083 | supercontig | sc0004083:4466..6526 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR006928 | htUSP_central_domain |
Blast
The following BLAST results are available for this feature:
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