TCONS_00043287 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043287
Unique NameTCONS_00043287
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length279

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043287 ID=TCONS_00043287|Name=TCONS_00043287|organism=Clytia hemisphaerica|type=transcript|length=279bp
ATTAGCTCCTAGCCAGTCTGAAATCTTGCCAACCTCAACATTAATAAGAT
TTTGAAGAGCTTCAGGGTTTTTATGACTCATAAAAAGACACGTATCGTCA
GCAAACAACGTCTGTGAGAATGATGAATTCAATGGCAGGACATTAATATA
AATCAAGAAAAGAAGGGGACCAAGCACTGAACCTTGGGAGACCCCGTGAG
ACATGGGTAAGGGTGTTGAATTAGCGTCGTTGCAGTAGACGCTTTGTTTT
CTGTTTGCAAGATAACTTCGAAACCATGA
Run BLAST on NCBI

transcript from alignment at sc0004095:262..540

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043287 ID=TCONS_00043287|Name=TCONS_00043287|organism=Clytia hemisphaerica|type=transcript|length=279bp|location=Sequence derived from alignment at sc0004095:262..540 (Clytia hemisphaerica)
TCATGGTTTCGAAGTTATCTTGCAAACAGAAAACAAAGCGTCTACTGCAA
CGACGCTAATTCAACACCCTTACCCATGTCTCACGGGGTCTCCCAAGGTT
CAGTGCTTGGTCCCCTTCTTTTCTTGATTTATATTAATGTCCTGCCATTG
AATTCATCATTCTCACAGACGTTGTTTGCTGACGATACGTGTCTTTTTAT
GAGTCATAAAAACCCTGAAGCTCTTCAAAATCTTATTAATGTTGAGGTTG
GCAAGATTTCAGACTGGCTAGGAGCTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026998XLOC_026998Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043287-exon-sc0004095-1491911889:262..540TCONS_00043287-exon-sc0004095-1491911889:262..540Clytia hemisphaericaexon
TCONS_00043287-exon-sc0004095-1510915933:262..540TCONS_00043287-exon-sc0004095-1510915933:262..540Clytia hemisphaericaexon
TCONS_00043287-exon-sc0004095-1575043694:262..540TCONS_00043287-exon-sc0004095-1575043694:262..540Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004095supercontigsc0004095:262..540 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.35172	0	0.777348	0	5.46811	1.34176	2.02416	3.31464	1.09564	0	0.236312	1.32146	2.95221	4.70835	0.881832	1.08046	1.70605	1.54428	3.03134	2.12329	4.12655	2.65647	1.09974	1.54887	1.69257	3.98194	4.05952	0	0	2.67037
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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