|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043291 ID=TCONS_00043291|Name=TCONS_00043291|organism=Clytia hemisphaerica|type=transcript|length=599bp
CCGAACCATCAATTGGACAAATTGAATTGGGAATGGAAGAGGCTAAAGGA
ATTTTCAATTCCAAAAGATACACTGTTGAGACAGAAGATTTGATACCCAT
CCGCCAATCAAATCGCTTGTATCTAtcgtccgccattttgaatttttgtg
gaGATTTCAACATTTTGGATACGGTTATTGACACAGAGGCCATGAAGGAA
GttcttaaaaagaaattcatCGCTCATTTCAAACTCAGACGGAGCAAACG
TCTTAACGTTAACGAATATGCTTATTGCAAAAATGGCGTCGCGACTATGA
GCTCTGTTATGACGCAATGTTATGGTAAATCCAGTGATCATTATGAAATG
AAGTGTAAAGTCAACCCATCCAAAACCTGTATTTATAAGGTTAATTGTTC
ATTGACGAATCAAGGTTGGAATTGCCCTGGCGTCCACCAATATAATCATA
TCGTTTGCTGTTATCTTAACTGCAAAGTTTGAGAAGGTTTTCAAAGCCAG
TCGTTTATCTGACTTTATTTAATAATAAAGTTTCGATGTGAATTATATAA
ATATAAGCCTtgttaattttaaaataatattcatCTCTTTATAATTGAC Run BLAST on NCBI protein sequence of TCONS_00043291-protein >TCONS_00043291-protein ID=TCONS_00043291-protein|Name=TCONS_00043291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
EPSIGQIELGMEEAKGIFNSKRYTVETEDLIPIRQSNRLYLSSAILNFCG
DFNILDTVIDTEAMKEVLKKKFIAHFKLRRSKRLNVNEYAYCKNGVATMS
SVMTQCYGKSSDHYEMKCKVNPSKTCIYKVNCSLTNQGWNCPGVHQYNHI
VCCYLNCKV Run BLAST on NCBI transcript from alignment at sc0004098:1..2061+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043291 ID=TCONS_00043291|Name=TCONS_00043291|organism=Clytia hemisphaerica|type=transcript|length=2061bp|location=Sequence derived from alignment at sc0004098:1..2061+ (Clytia hemisphaerica)
CCGAACCATCAATTGGACAAATTGAATTGGGAATGGAAGAGGTAACACTT
TATAGCAAAACGTGCCAAAGCACAAACACTACACATAACATATGGTAGTA
ATAGAACATTAAAAGATTGAAACACTTGACTCTTCTTcctgtaaaaatat
cgactgTTTGCCTTATCAGAATTCTCTTATAGGACAGAAGGAGTCTTTAA
ACAAAGTACTTTGAAACTTGACATTGCAATGGAGGATGGACTAACTGTCT
ATTCAATTTTCCACTACAGGCTAAAGGAATTTTCAATTCCAAAAGATACA
CTGTTGAGACAGAAGATTTGATACCCATCCGCCAATCAAATCGCTTGTAT
CTAtcgtccgccattttgaatttttgtggaGATTTCAACATTTTGGATAC
GGTTATTGACACAGAGGCCATGAAGGAAGttcttaaaaagaaattcatCG
GTAAGAAAACATTTACCCACAGAATAGGTATTAGCTTTAACGTTTGTACA
AGCAGGGGGGGTACAAAGGCAgggggtactaacccatagccgggtggtgg
tgtctatttttgcatttcaaaaaagttagtacccggtactactttAGGGG
TGGGGGTGTGTATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNACCCTGCCTCTGTACCCCCCCTGGTACA
AGACCAGATTTtgccttttattttttttgcaaatactCGAATGATTTTTT
TGCGCACATGCCTAGATGCCTCAAAATAGAGTCATATGGGTTCTATAAGA
GAGTTGGACACCATTTAGGTAGAGTTAGGGAGATCTTCCCGACAAATTAT
AAGAGTAGCACATTTTATGCCCACGATTCGGAAAATTATTTAGTAGAGAT
ATATCTagtttttagtttattttttttagtttgagaAAACTATGTTAGAT
CGTCTGTAAAACTTATTTATTTCAGCTCATTTCAAACTCAGACGGAGCAA
ACGTCTTAACGTTAACGAATATGCTTATTGCAAAAATGGCGTCGCGACTA
TGAGCTCTGTTATGACGCAATGTTATGGTAAATCCAGTGATCATTATGAA
ATGAAGTGTAAAGTCAACCCATCCAAAACCTGTATTTATAAGGTTAATTG
TTCATTGACGAATCAAGGTTGGAATTGCCCTGGCGTCCACCAATATAANC
AACATTCAGTACATACGTCTCCTGCATaagatggcatttttgtgaaagga
gcgagccttacttgggggtaattgacaatttataattgaaaatgctctaa
aaatggcattcttagcttgagtagcaaaattccatgatggtgatattctt
agcatattcttaattttttcgccattttcatcatggacattcttataaag
tgtattcttataaaaaaaaaagcgtgtattttttttagtttgagaAAACT
ATGTTAGATCGTCTGTAAAACTTATTTATTTCAGCTCATTTCAAACTCAG
ACGGAGCAAACGTCTTAACGTTAACGAATATGCTTATTGCAAAAATGGCG
TCGCGACTATGAGCTCTGTTATGACGCAATGTTATGGTAAATCCAGTGAT
CATTATGAAATGAAGTGTAAAGTCAACCCATCCAAAACCTGTATTTATAA
GGTTAATTGTTCATTGACGAATCAAGGTTGGAATTGCCCTGGCGTCCACC
AATATAATCATATCGTTTGCTGTTATCTTAACTGCAAAGTTTGAGAAGGT
TTTCAAAGCCAGTCGTTTATCTGACTTTATTTAATAATAAAGTTTCGATG
TGAATTATATAAATATAAGCCTtgttaattttaaaataatattcatCTCT
TTATAATTGAC Coding sequence (CDS) from alignment at sc0004098:1..2061+ >TCONS_00043291 ID=TCONS_00043291|Name=TCONS_00043291|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at sc0004098:1..2061+ (Clytia hemisphaerica)
GAACCATCAATTGGACAAATTGAATTGGGAATGGAAGAGGCTAAAGGAAT
TTTCAATTCCAAAAGATACACTGTTGAGACAGAAGATTTGATACCCATCC
GCCAATCAAATCGCTTGTATCTAtcgtccgccattttgaatttttgtgga
GATTTCAACATTTTGGATACGGTTATTGACACAGAGGCCATGAAGGAAGt
tcttaaaaagaaattcatCGCTCATTTCAAACTCAGACGGAGCAAACGTC
TTAACGTTAACGAATATGCTTATTGCAAAAATGGCGTCGCGACTATGAGC
TCTGTTATGACGCAATGTTATGGTAAATCCAGTGATCATTATGAAATGAA
GTGTAAAGTCAACCCATCCAAAACCTGTATTTATAAGGTTAATTGTTCAT
TGACGAATCAAGGTTGGAATTGCCCTGGCGTCCACCAATATAATCATATC
GTTTGCTGTTATCTTAACTGCAAAGTTTGAGAACCATCAATTGGACAAAT
TGAATTGGGAATGGAAGAGGCTAAAGGAATTTTCAATTCCAAAAGATACA
CTGTTGAGACAGAAGATTTGATACCCATCCGCCAATCAAATCGCTTGTAT
CTAtcgtccgccattttgaatttttgtggaGATTTCAACATTTTGGATAC
GGTTATTGACACAGAGGCCATGAAGGAAGttcttaaaaagaaattcatCG
CTCATTTCAAACTCAGACGGAGCAAACGTCTTAACGTTAACGAATATGCT
TATTGCAAAAATGGCGTCGCGACTATGAGCTCTGTTATGACGCAATGTTA
TGGTAAATCCAGTGATCATTATGAAATGAAGTGTAAAGTCAACCCATCCA
AAACCTGTATTTATAAGGTTAATTGTTCATTGACGAATCAAGGTTGGAAT
TGCCCTGGCGTCCACCAATATAATCATATCGTTTGCTGTTATCTTAACTG
CAAAGTTTGAGAACCATCAATTGGACAAATTGAATTGGGAATGGAAGAGG
CTAAAGGAATTTTCAATTCCAAAAGATACACTGTTGAGACAGAAGATTTG
ATACCCATCCGCCAATCAAATCGCTTGTATCTAtcgtccgccattttgaa
tttttgtggaGATTTCAACATTTTGGATACGGTTATTGACACAGAGGCCA
TGAAGGAAGttcttaaaaagaaattcatCGCTCATTTCAAACTCAGACGG
AGCAAACGTCTTAACGTTAACGAATATGCTTATTGCAAAAATGGCGTCGC
GACTATGAGCTCTGTTATGACGCAATGTTATGGTAAATCCAGTGATCATT
ATGAAATGAAGTGTAAAGTCAACCCATCCAAAACCTGTATTTATAAGGTT
AATTGTTCATTGACGAATCAAGGTTGGAATTGCCCTGGCGTCCACCAATA
TAATCATATCGTTTGCTGTTATCTTAACTGCAAAGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043291-exon-sc0004098-1491911889:1..41 | TCONS_00043291-exon-sc0004098-1491911889:1..41 | Clytia hemisphaerica | exon |
| TCONS_00043291-exon-sc0004098-1510915933:1..41 | TCONS_00043291-exon-sc0004098-1510915933:1..41 | Clytia hemisphaerica | exon |
| TCONS_00043291-exon-sc0004098-1575043694:1..41 | TCONS_00043291-exon-sc0004098-1575043694:1..41 | Clytia hemisphaerica | exon |
| TCONS_00043291-exon-sc0004098-1491911889:270..450 | TCONS_00043291-exon-sc0004098-1491911889:270..450 | Clytia hemisphaerica | exon |
| TCONS_00043291-exon-sc0004098-1510915933:270..450 | TCONS_00043291-exon-sc0004098-1510915933:270..450 | Clytia hemisphaerica | exon |
| TCONS_00043291-exon-sc0004098-1575043694:270..450 | TCONS_00043291-exon-sc0004098-1575043694:270..450 | Clytia hemisphaerica | exon |
| TCONS_00043291-exon-sc0004098-1491911889:1685..2061 | TCONS_00043291-exon-sc0004098-1491911889:1685..2061 | Clytia hemisphaerica | exon |
| TCONS_00043291-exon-sc0004098-1510915933:1685..2061 | TCONS_00043291-exon-sc0004098-1510915933:1685..2061 | Clytia hemisphaerica | exon |
| TCONS_00043291-exon-sc0004098-1575043694:1685..2061 | TCONS_00043291-exon-sc0004098-1575043694:1685..2061 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004098 | supercontig | sc0004098:1..2061 + |
Blast
The following BLAST results are available for this feature:
|
