TCONS_00043295 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043295
Unique NameTCONS_00043295
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length635

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043295 ID=TCONS_00043295|Name=TCONS_00043295|organism=Clytia hemisphaerica|type=transcript|length=635bp
TAGGTGTATTACCGAAGTTGTACGAATGTGCATTTTGTCATCAAATCATT
CGAAGGTTTACCGAGCTACCATGTGGTCATGGCTTTTGTGAAAAATGTCT
TGATAAATGGGAAAAGAAGAAACAAGATGAAAATGAGTAGAAGaccaaat
acacgttttttttataagaacatccaaaatttttgaagcctccggatatt
cttaactttttattttgaccattttatgattttttttgaccattttccta
agaaatagggtgtttttgaatccacaaagccttgaaatgttcttaacttg
ttcttaacattttggctagcCAAGCCTTATGCATTTTAACCCTAACCAAT
GGAGAACTACCTTTAAATTGAAGCAAAAACTTTTCGGTTTCCTGTATTTC
TTTTTTGTGAAGCTTTATTATAGTTTCCTCCTTCCTGGTTATTTAGGAAC
GCTGTGCTGAGATGTATAGTTTGCAACCAAGTATACCCTGTAGATAAGGT
TAGTCAATTCTCTATTTGTAACTactagtacggtattacgggatttgacg
aaaaaaaggacgggaaaacggtattttaaaatcagacggtgacggtattt
ggccttattttttgtcattatgccggtatttgaac
Run BLAST on NCBI

transcript from alignment at sc0004098:7361..7995-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043295 ID=TCONS_00043295|Name=TCONS_00043295|organism=Clytia hemisphaerica|type=transcript|length=635bp|location=Sequence derived from alignment at sc0004098:7361..7995- (Clytia hemisphaerica)
TAGGTGTATTACCGAAGTTGTACGAATGTGCATTTTGTCATCAAATCATT
CGAAGGTTTACCGAGCTACCATGTGGTCATGGCTTTTGTGAAAAATGTCT
TGATAAATGGGAAAAGAAGAAACAAGATGAAAATGAGTAGAAGACCAAAT
ACACGTTTTTTTTATAAGAACATCCAAAATTTTTGAAGCCTCCGGATATT
CTTAACTTTTTATTTTGACCATTTTATGATTTTTTTTGACCATTTTCCTA
AGAAATAGGGTGTTTTTGAATCCACAAAGCCTTGAAATGTTCTTAACTTG
TTCTTAACATTTTGGCTAGCCAAGCCTTATGCATTTTAACCCTAACCAAT
GGAGAACTACCTTTAAATTGAAGCAAAAACTTTTCGGTTTCCTGTATTTC
TTTTTTGTGAAGCTTTATTATAGTTTCCTCCTTCCTGGTTATTTAGGAAC
GCTGTGCTGAGATGTATAGTTTGCAACCAAGTATACCCTGTAGATAAGGT
TAGTCAATTCTCTATTTGTAACTACTAGTACGGTATTACGGGATTTGACG
AAAAAAAGGACGGGAAAACGGTATTTTAAAATCAGACGGTGACGGTATTT
GGCCTTATTTTTTGTCATTATGCCGGTATTTGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027003XLOC_027003Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043295-exon-sc0004098-1575043694:7361..7995TCONS_00043295-exon-sc0004098-1575043694:7361..7995Clytia hemisphaericaexon
TCONS_00043295-exon-sc0004098-1510915933:7361..7995TCONS_00043295-exon-sc0004098-1510915933:7361..7995Clytia hemisphaericaexon
TCONS_00043295-exon-sc0004098-1491911889:7361..7995TCONS_00043295-exon-sc0004098-1491911889:7361..7995Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004098supercontigsc0004098:7361..7995 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.351472	0.127309	0.381802	0.794403	0.608215	0.138867	0.409689	0.210773	0.0981315	0	0	0.234602	0.224081	0.974209	1.27311	1.51689	0	0.271584	0.22411	0.259173	1.14735	0.82389	0.482068	0.848784	0.58021	1.09365	0.583334	1.431	0.377014	0.130423
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043295 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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