TCONS_00043297 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043297
Unique NameTCONS_00043297
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043297 ID=TCONS_00043297|Name=TCONS_00043297|organism=Clytia hemisphaerica|type=transcript|length=594bp
taaaaatcgccagaacagctaagaatcgccggatttcttgaatttctcga
gttgttcttgtattattctgcattttcatactattgttgtcatttttcaa
ttgtcttttattacatcaatcttcaggtaggtacattcagcatgttgctt
gtttaaatCTATTGTTTTACCAAGTATCACCGAACAACAGAATAATTgcc
agaaaaaatgaaaaaatgtgcTGACAAGGTAATCTCTTTTGAGTTGCTTT
CATGTACAAATTATAACAATATATCTTTTTACAATTCATGAAATAAAAAG
ACATGGCATCTCCGATAGGCTCAACAGTTGTTCCTCTTTACAATGGAGAG
AAAATCCCAGCTTTGGGTCTGGGAACATGGAAAAGCAAACCAGGAGAAGT
GGGAGCTGCAGTTGAAGCTGCCATAGATTCAGGTTATCGTCACATTGATT
GTGCCGCAATTTACGGCAATGAAAAAGAAGTCGGAGAAgcattgaaaaag
aagattgaTGGTGTAAGTattagaaatttcattttttgcagaaatttata
aaaacagGAGAAATTAGTGTGGTTATACAATAAATAAATGTCGC
Run BLAST on NCBI

transcript from alignment at sc0004101:565..1158

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043297 ID=TCONS_00043297|Name=TCONS_00043297|organism=Clytia hemisphaerica|type=transcript|length=594bp|location=Sequence derived from alignment at sc0004101:565..1158 (Clytia hemisphaerica)
GCGACATTTATTTATTGTATAACCACACTAATTTCTCctgtttttataaa
tttctgcaaaaaatgaaatttctaatACTTACACCAtcaatcttcttttt
caatgcTTCTCCGACTTCTTTTTCATTGCCGTAAATTGCGGCACAATCAA
TGTGACGATAACCTGAATCTATGGCAGCTTCAACTGCAGCTCCCACTTCT
CCTGGTTTGCTTTTCCATGTTCCCAGACCCAAAGCTGGGATTTTCTCTCC
ATTGTAAAGAGGAACAACTGTTGAGCCTATCGGAGATGCCATGTCTTTTT
ATTTCATGAATTGTAAAAAGATATATTGTTATAATTTGTACATGAAAGCA
ACTCAAAAGAGATTACCTTGTCAgcacattttttcattttttctggcAAT
TATTCTGTTGTTCGGTGATACTTGGTAAAACAATAGatttaaacaagcaa
catgctgaatgtacctacctgaagattgatgtaataaaagacaattgaaa
aatgacaacaatagtatgaaaatgcagaataatacaagaacaactcgaga
aattcaagaaatccggcgattcttagctgttctggcgattttta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027005XLOC_027005Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043297-exon-sc0004101-1491911889:565..1158TCONS_00043297-exon-sc0004101-1491911889:565..1158Clytia hemisphaericaexon
TCONS_00043297-exon-sc0004101-1510915933:565..1158TCONS_00043297-exon-sc0004101-1510915933:565..1158Clytia hemisphaericaexon
TCONS_00043297-exon-sc0004101-1575043694:565..1158TCONS_00043297-exon-sc0004101-1575043694:565..1158Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004101supercontigsc0004101:565..1158 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
99.6141	104.418	104.441	104.323	25.351	23.0768	37.3191	49.3564	122.769	96.0896	133.505	167.851	176.87	205.386	160.692	155.658	149.42	150.103	98.3493	102.3	84.1956	75.6166	72.6923	75.6936	108.435	124.06	88.4491	88.5967	57.2764	54.2915
Blast
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BLAST of TCONS_00043297 vs. Swiss-Prot (Human)
Match: AK1A1 (Alcohol dehydrogenase [NADP(+)] OS=Homo sapiens GN=AKR1A1 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 4.729e-21
Identity = 39/64 (60.94%), Postives = 53/64 (82.81%), Query Frame = 3 
Query:  315 IGSTVVPLYNGEKIPALGLGTWKSKPGEVGAAVEAAIDSGYRHIDCAAIYGNEKEVGEALKKKI 506
            + ++ V L+ G+K+P +GLGTWKS+PG+V AAV+ A+  GYRHIDCAAIYGNE E+GEALK+ +
Sbjct:    1 MAASCVLLHTGQKMPLIGLGTWKSEPGQVKAAVKYALSVGYRHIDCAAIYGNEPEIGEALKEDV 64
The following BLAST results are available for this feature:
BLAST of TCONS_00043297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AK1A14.729e-2160.94Alcohol dehydrogenase [NADP(+)] OS=Homo sapiens GN... [more]
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