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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043298 ID=TCONS_00043298|Name=TCONS_00043298|organism=Clytia hemisphaerica|type=transcript|length=629bp
CTTGCTTTGACCAAAATTAATgtgttttgttttatcaaaattcacTACCA
GACCCCATTTTTCGAACCATTCAAACAGTATTTCGACATATTCATCAAGG
TACAATAAAGTCATGTGATTGAGCTGTTATCTTGCTTGGCCGGTATTATT
TGACAATGAATATGGTTCAATTGAGAGAAACATTCTTGAAAGCAATCCAT
TACTGAAACTTTGTTGCTTTTTGCTGTGTTGTGAACATTCGAGACATGAG
TTATccagaaatttcaaaagaatggTTACATCGCCGTGGCATTaccacca
aaattttttttctacaaaattttGTGTTTGGGATGGAATATTCATTGACA
TTTGTCACTTTGTATATTTATTTAAAAGACGTCTTAAAATCACGACACGT
CGAATTTTTCTATAGTCTAATATCCGGCAGTTATTTGGCATTAACGGTGA
TAGCTGGAATATTTGTGAGTAAATTGTTCGACAATACACGACGAACCCGT
CTTTTATTTATCGTTGGAAATACTTTGACGTGTTTTGGAAACATCCTTTA
TACGATCCCTTATTCACCTTGGTTGCTGTTTGCTGGCCGCACCATATCag
gtaaaaatatttataattaaaaaaaattc Run BLAST on NCBI protein sequence of TCONS_00043298-protein >TCONS_00043298-protein ID=TCONS_00043298-protein|Name=TCONS_00043298-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MSYPEISKEWLHRRGITTKIFFLQNFVFGMEYSLTFVTLYIYLKDVLKSR
HVEFFYSLISGSYLALTVIAGIFVSKLFDNTRRTRLLFIVGNTLTCFGNI
LYTIPYSPWLLFAGRTISGKNIYN Run BLAST on NCBI transcript from alignment at sc0004102:1660..4004- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043298 ID=TCONS_00043298|Name=TCONS_00043298|organism=Clytia hemisphaerica|type=transcript|length=2345bp|location=Sequence derived from alignment at sc0004102:1660..4004- (Clytia hemisphaerica)
CTTGCTTTGACCAAAATTAATGTGTTTTGTTTTATCAAAATTCACTACCA
GACCCCATTTTTCGAACCATTCAAACAGTATTTCGACATATTCATCAAGG
TGAGAATCACAAACTCTTTTGTATCTTTCCCATGACCCTAGATCGTCAGC
AAACTGAGATACTTTAATTTTACTATTAGGAGGTTTTGGTACATCAGACA
CAAAGATAGAAACCCTTTAACTGCCGTTCGTATTTTTTAAGGTTCGACAC
CTATTTGCCGCGGGAAAAAGGAAGGTTCGACCTATTTGCCAGATGTCGGC
ATATGCCGACATGGGCAAAAGGTAGCGATTTTGACTTCATTTTCTGAATA
ATATATGAAGTATCAACCAAGGACTATAATTTTGAGTTGAACATTGTTGA
ATAGTTATTTTTCAACATAGAAAAGCTTTTAACTATTGTCTTTTTTCATT
TCAAACTATCTAATACAAAATCTTTGTAGAAGTGTTAAATTGTCGGCAAA
TCCCGACATCGGCAAAGAAATTGAAAGTACCCATGTCGGCATATGCCGAC
ATCGGCAGTTAAAGGGTTTTAACTCCCAGCAGATTTTATTACAGCTACTT
TCTATTCATAAAAAAACCTCTCAAGGGATATAATCACTATGGAAATTGTT
TGAATACGAGGCAAGTGATGTTCGTGACGTAATTTATGAAAAAGTCTATT
CTGATACCTTTTTAATTACAATGTTAAAAAATCAGTACTTACAATGGATG
GATAAAATGTATTAAAACAAGGGATTCTCCTATAAAAAAGCTACCAATGA
AATAAGTATAACAAAGGTGGGTTTACATCTGTAGGGGAGAATCGATTAAC
ACTCCCTTTGTCGATAACAATTCAGAACATAAACGAAAAAAAATCTCAAA
ATCACTTTTACGAATTTTTTTATAAACATAATCGATCCTCCCCTCGTTAT
TGCCATTGTTACAAGAGGTAGGTCTGGGTACCTCTTAAGACAAAGGACGT
TTTCAATTTATTTTAAATGAGTAAAAAATTGGAAAATGATTTCGATGACG
ATGATGACAACTAAAGTCTGTCTCAAAATAATTTGCAGCTGGAGAAAAAA
ATGGCTGCAACTTTTGATAGAATTCGAATCAAGTTGCGATTTTCCACTCA
CGAATATCTTTTTAACAAGCACAAAATCGCAACTTGATTCGAATTCAATC
AAAAGTTGCAGCCATTTTTGTCACCAGCTGCAAATTATTTTGAGACAGAC
TTTACGCAAGTGACGTTTTTGATCAAGCTTTACTACGCAGCATGAACTTT
TATGGTGTCCATTTGAAATGTATAGAAGGTTGAATATAGAAAAACCATAT
TCGCATTCTGTAATAAAATTTGAACAAATCAGAAAGCTTAGGGAAAATCA
ATTATGACTTGCAAAATAATCGTGATGGAATCAAAAGAAATCGTGGTATT
TCTATAGTATTTCTTAATCGATCCTCTCCTAGATGTAAACCCACCATAAA
GAAAGCTTTCTTATGCCATGCTTTTGTATTTCATAAGAAAAAACTATATA
AAAACATAAGGCCATGAAATTTCGATGGCTAAAATTTTAATAAAAGAACA
TTTTAAGACTTTAGCGACACTAAAACACCCGATTCCTTAAAAAAATGGGC
AAAAATACTCGCAAAATGGGGAAATAAGAACATGTTAAGAACCTTTAGGC
TTAAAACTCAAAAAGTTGAGAGCATCTGAAGGCTTCAAAAACTGAATGTT
CTTGTAAAAAAAGTGTATTAATATCATTAATGTGGTTTTTATTGTTTAAA
TTCATACACGAAAAGGTACAATAAAGTCATGTGATTGAGCTGTTATCTTG
CTTGGCCGGTATTATTTGACAATGAATATGGTTCAATTGAGAGAAACATT
CTTGAAAGCAATCCATTACTGAAACTTTGTTGCTTTTTGCTGTGTTGTGA
ACATTCGAGACATGAGTTATCCAGAAATTTCAAAAGAATGGTTACATCGC
CGTGGCATTACCACCAAAATTTTTTTTCTACAAAATTTTGTGTTTGGGAT
GGAATATTCATTGACATTTGTCACTTTGTATATTTATTTAAAAGACGTCT
TAAAATCACGACACGTCGAATTTTTCTATAGTCTAATATCCGGCAGTTAT
TTGGCATTAACGGTGATAGCTGGAATATTTGTGAGTAAATTGTTCGACAA
TACACGACGAACCCGTCTTTTATTTATCGTTGGAAATACTTTGACGTGTT
TTGGAAACATCCTTTATACGATCCCTTATTCACCTTGGTTGCTGTTTGCT
GGCCGCACCATATCAGGTAAAAATATTTATAATTAAAAAAAATTC Coding sequence (CDS) from alignment at sc0004102:1660..4004- >TCONS_00043298 ID=TCONS_00043298|Name=TCONS_00043298|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0004102:1660..4004- (Clytia hemisphaerica)
ATGAGTTATCCAGAAATTTCAAAAGAATGGTTACATCGCCGTGGCATTAC
CACCAAAATTTTTTTTCTACAAAATTTTGTGTTTGGGATGGAATATTCAT
TGACATTTGTCACTTTGTATATTTATTTAAAAGACGTCTTAAAATCACGA
CACGTCGAATTTTTCTATAGTCTAATATCCGGCAGTTATTTGGCATTAAC
GGTGATAGCTGGAATATTTGTGAGTAAATTGTTCGACAATACACGACGAA
CCCGTCTTTTATTTATCGTTGGAAATACTTTGACGTGTTTTGGAAACATC
CTTTATACGATCCCTTATTCACCTTGGTTGCTGTTTGCTGGCCGCACCAT
ATCAGGTAAAAATATTTATAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043298-exon-sc0004102-1575043694:3906..4004 | TCONS_00043298-exon-sc0004102-1575043694:3906..4004 | Clytia hemisphaerica | exon |
| TCONS_00043298-exon-sc0004102-1575043694:1660..2189 | TCONS_00043298-exon-sc0004102-1575043694:1660..2189 | Clytia hemisphaerica | exon |
| TCONS_00043298-exon-sc0004102-1510915933:3906..4004 | TCONS_00043298-exon-sc0004102-1510915933:3906..4004 | Clytia hemisphaerica | exon |
| TCONS_00043298-exon-sc0004102-1510915933:1660..2189 | TCONS_00043298-exon-sc0004102-1510915933:1660..2189 | Clytia hemisphaerica | exon |
| TCONS_00043298-exon-sc0004102-1491911889:3906..4004 | TCONS_00043298-exon-sc0004102-1491911889:3906..4004 | Clytia hemisphaerica | exon |
| TCONS_00043298-exon-sc0004102-1491911889:1660..2189 | TCONS_00043298-exon-sc0004102-1491911889:1660..2189 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004102 | supercontig | sc0004102:1660..4004 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020846 | MFS_dom |
Blast
The following BLAST results are available for this feature:
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